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VAMP1 vesicle associated membrane protein 1 [ Pelodiscus sinensis (Chinese soft-shelled turtle) ]

Gene ID: 112545980, updated on 15-Mar-2024

Summary

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Gene symbol
VAMP1
Gene description
vesicle associated membrane protein 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Pelodiscus sinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Trionychia; Trionychidae; Pelodiscus
Orthologs
human mouse all
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Genomic context

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See VAMP1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
102 current PelSin_1.0 (GCF_000230535.1) Unplaced Scaffold NW_005855478.1 (908477..925418)

NW_005855478.1Genomic Context describing neighboring genes Neighboring gene non-SMC condensin I complex subunit D2 Neighboring gene small nucleolar RNA U85 Neighboring gene mitochondrial ribosomal protein L51 Neighboring gene sodium channel epithelial 1 subunit alpha Neighboring gene F-box protein 40

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005855478 Unplaced Scaffold Reference PelSin_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables SNAP receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables syntaxin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in SNARE complex assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle fusion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of SNARE complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
vesicle-associated membrane protein 1
Names
vesicle-associated membrane protein 1 (synaptobrevin 1)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pelodiscus sinensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PelSin_1.0 Primary Assembly

Genomic

  1. NW_005855478.1 Reference PelSin_1.0 Primary Assembly

    Range
    908477..925418
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025185204.1 → XP_025040989.1  vesicle-associated membrane protein 1 isoform X6

    Conserved Domains (1) summary
    cd15870
    Location:47 → 107
    R-SNARE_VAMP2; SNARE motif of VAMP2

  2. XM_025185199.1 → XP_025040984.1  vesicle-associated membrane protein 1 isoform X1

    Conserved Domains (1) summary
    cd15870
    Location:47 → 107
    R-SNARE_VAMP2; SNARE motif of VAMP2

  3. XM_025185205.1 → XP_025040990.1  vesicle-associated membrane protein 1 isoform X7

    Conserved Domains (1) summary
    cd15870
    Location:47 → 107
    R-SNARE_VAMP2; SNARE motif of VAMP2

  4. XM_025185201.1 → XP_025040986.1  vesicle-associated membrane protein 1 isoform X3

    Conserved Domains (1) summary
    cd15870
    Location:36 → 96
    R-SNARE_VAMP2; SNARE motif of VAMP2

  5. XM_025185203.1 → XP_025040988.1  vesicle-associated membrane protein 1 isoform X5

    Conserved Domains (1) summary
    cd15870
    Location:47 → 107
    R-SNARE_VAMP2; SNARE motif of VAMP2

  6. XM_025185200.1 → XP_025040985.1  vesicle-associated membrane protein 1 isoform X2

    Conserved Domains (1) summary
    cd15870
    Location:47 → 107
    R-SNARE_VAMP2; SNARE motif of VAMP2

  7. XM_025185206.1 → XP_025040991.1  vesicle-associated membrane protein 1 isoform X8

    Conserved Domains (1) summary
    cd15870
    Location:47 → 107
    R-SNARE_VAMP2; SNARE motif of VAMP2

  8. XM_025185202.1 → XP_025040987.1  vesicle-associated membrane protein 1 isoform X4

    Conserved Domains (1) summary
    cd15870
    Location:47 → 107
    R-SNARE_VAMP2; SNARE motif of VAMP2

RNA

  1. XR_003089572.1 RNA Sequence

  2. XR_003089571.1 RNA Sequence

  3. XR_003089574.1 RNA Sequence

  4. XR_003089575.1 RNA Sequence

  5. XR_003089573.1 RNA Sequence

Nucleotide Protein
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