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SAMD4A sterile alpha motif domain containing 4A [ Neophocaena asiaeorientalis asiaeorientalis (Yangtze finless porpoise) ]

Gene ID: 112392899, updated on 15-Mar-2024

Summary

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Gene symbol
SAMD4A
Gene description
sterile alpha motif domain containing 4A
Gene type
protein coding
RefSeq status
MODEL
Organism
Neophocaena asiaeorientalis asiaeorientalis (sub-species: asiaeorientalis)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Phocoenidae; Neophocaena
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
100 current Neophocaena_asiaeorientalis_V1 (GCF_003031525.1) Unplaced Scaffold NW_020185330.1 (3179349..3396684)

NW_020185330.1Genomic Context describing neighboring genes Neighboring gene glia maturation factor beta Neighboring gene cell growth regulator with ring finger domain 1 Neighboring gene GTP cyclohydrolase 1 Neighboring gene Krueppel-like factor 17 Neighboring gene WD repeat and HMG-box DNA binding protein 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020185330 Unplaced Scaffold Reference Neophocaena_asiaeorientalis_V1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables translation repressor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear-transcribed mRNA poly(A) tail shortening IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of mRNA stability IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in P-body IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein Smaug homolog 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Neophocaena asiaeorientalis asiaeorientalis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Neophocaena_asiaeorientalis_V1 Primary Assembly

Genomic

  1. NW_020185330.1 Reference Neophocaena_asiaeorientalis_V1 Primary Assembly

    Range
    3179349..3396684
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024734791.1 → XP_024590559.1  protein Smaug homolog 1 isoform X2

    UniProtKB/TrEMBL
    A0A341AL22
    Conserved Domains (1) summary
    cd09557
    Location:320 → 382
    SAM_Smaug; SAM domain of Smaug subfamily

  2. XM_024734790.1 → XP_024590558.1  protein Smaug homolog 1 isoform X1

    UniProtKB/TrEMBL
    A0A341ALW5
    Conserved Domains (1) summary
    cd09557
    Location:238 → 294
    SAM_Smaug; SAM domain of Smaug subfamily
Nucleotide Protein
Heading Accession and Version

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