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PMS1 PMS1 homolog 1, mismatch repair system component [ Neophocaena asiaeorientalis asiaeorientalis (Yangtze finless porpoise) ]

Gene ID: 112392140, updated on 15-Mar-2024

Summary

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Gene symbol
PMS1
Gene description
PMS1 homolog 1, mismatch repair system component
Gene type
protein coding
RefSeq status
MODEL
Organism
Neophocaena asiaeorientalis asiaeorientalis (sub-species: asiaeorientalis)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Phocoenidae; Neophocaena
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
100 current Neophocaena_asiaeorientalis_V1 (GCF_003031525.1) Unplaced Scaffold NW_020185317.1 (5894696..5993718, complement)

NW_020185317.1Genomic Context describing neighboring genes Neighboring gene chromosome unknown C2orf88 homolog Neighboring gene myostatin Neighboring gene ORMDL sphingolipid biosynthesis regulator 1 Neighboring gene O-sialoglycoprotein endopeptidase like 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020185317 Unplaced Scaffold Reference Neophocaena_asiaeorientalis_V1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP-dependent DNA damage sensor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables mismatched DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mismatch repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of MutLalpha complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
PMS1 protein homolog 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Neophocaena asiaeorientalis asiaeorientalis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Neophocaena_asiaeorientalis_V1 Primary Assembly

Genomic

  1. NW_020185317.1 Reference Neophocaena_asiaeorientalis_V1 Primary Assembly

    Range
    5894696..5993718 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024733673.1 → XP_024589441.1  PMS1 protein homolog 1 isoform X1

    UniProtKB/TrEMBL
    A0A341AFQ1
    Conserved Domains (2) summary
    cd01390
    Location:573 → 637
    HMGB-UBF_HMG-box; class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal ...
    TIGR00585
    Location:1 → 318
    mutl; DNA mismatch repair protein MutL

  2. XM_024733672.1 → XP_024589440.1  PMS1 protein homolog 1 isoform X1

    UniProtKB/TrEMBL
    A0A341AFQ1
    Conserved Domains (2) summary
    cd01390
    Location:573 → 637
    HMGB-UBF_HMG-box; class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal ...
    TIGR00585
    Location:1 → 318
    mutl; DNA mismatch repair protein MutL

  3. XM_024733674.1 → XP_024589442.1  PMS1 protein homolog 1 isoform X1

    UniProtKB/TrEMBL
    A0A341AFQ1
    Conserved Domains (2) summary
    cd01390
    Location:573 → 637
    HMGB-UBF_HMG-box; class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal ...
    TIGR00585
    Location:1 → 318
    mutl; DNA mismatch repair protein MutL

  4. XM_024733677.1 → XP_024589445.1  PMS1 protein homolog 1 isoform X2

    UniProtKB/TrEMBL
    A0A341AFQ6
    Conserved Domains (2) summary
    cd01390
    Location:573 → 637
    HMGB-UBF_HMG-box; class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal ...
    TIGR00585
    Location:1 → 318
    mutl; DNA mismatch repair protein MutL

RNA

  1. XR_003001632.1 RNA Sequence

  2. XR_003001633.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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