U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

arhgef9a Cdc42 guanine nucleotide exchange factor (GEF) 9a [ Oncorhynchus tshawytscha (Chinook salmon) ]

Gene ID: 112257681, updated on 18-Jun-2024

Summary

Go to the top of the page Help
Gene symbol
arhgef9a
Gene description
Cdc42 guanine nucleotide exchange factor (GEF) 9a
See related
Ensembl:ENSOTSG00005001039
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus tshawytscha
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Also known as
arhgef9
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: LG09
Exon count:
12
Annotation release Status Assembly LG Location
101 current Otsh_v2.0 (GCF_018296145.1) LG09 NC_056437.1 (27475558..27498797)
100 previous assembly Otsh_v1.0 (GCF_002872995.1) Chromosome 9 NC_037105.1 (23441624..23464855)

Linkage Group LG09 - NC_056437.1Genomic Context describing neighboring genes Neighboring gene myotubularin-related protein 8-like Neighboring gene APC membrane recruitment protein 1 Neighboring gene GRB2 associated binding protein 3 Neighboring gene SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables guanyl-nucleotide exchange factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
rho guanine nucleotide exchange factor 9
Names
Cdc42 guanine nucleotide exchange factor 9

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Oncorhynchus tshawytscha Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Otsh_v2.0 Primary Assembly

Genomic

  1. NC_056437.1 Reference Otsh_v2.0 Primary Assembly

    Range
    27475558..27498797
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024431446.2 → XP_024287214.1  rho guanine nucleotide exchange factor 9 isoform X3

    UniProtKB/TrEMBL
    A0A8C8C226
    Conserved Domains (3) summary
    cd11828
    Location:1 → 43
    SH3_ARHGEF9_like; Src homology 3 domain of ARHGEF9-like Rho guanine nucleotide exchange factors
    smart00325
    Location:127 → 306
    RhoGEF; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases
    cd01224
    Location:311 → 450
    PH_Collybistin_ASEF; Collybistin/APC-stimulated guanine nucleotide exchange factor pleckstrin homology (PH) domain

  2. XM_024431444.2 → XP_024287212.1  rho guanine nucleotide exchange factor 9 isoform X1

    UniProtKB/TrEMBL
    A0A8C8BTD7, A0A8C8BTG4
    Related
    ENSOTSP00005001839.1, ENSOTST00005002069.2
    Conserved Domains (3) summary
    cd11975
    Location:11 → 68
    SH3_ARHGEF9; Src homology 3 domain of the Rho guanine nucleotide exchange factor ARHGEF9
    smart00325
    Location:152 → 331
    RhoGEF; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases
    cd01224
    Location:336 → 475
    PH_Collybistin_ASEF; Collybistin/APC-stimulated guanine nucleotide exchange factor pleckstrin homology (PH) domain

  3. XM_024431447.2 → XP_024287215.1  rho guanine nucleotide exchange factor 9 isoform X4

    UniProtKB/TrEMBL
    A0A8C8BTG4
    Related
    ENSOTSP00005022360.2, ENSOTST00005024232.2
    Conserved Domains (3) summary
    cd11975
    Location:11 → 72
    SH3_ARHGEF9; Src homology 3 domain of the Rho guanine nucleotide exchange factor ARHGEF9
    smart00325
    Location:122 → 301
    RhoGEF; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases
    cd01224
    Location:306 → 445
    PH_Collybistin_ASEF; Collybistin/APC-stimulated guanine nucleotide exchange factor pleckstrin homology (PH) domain

  4. XM_024431445.2 → XP_024287213.1  rho guanine nucleotide exchange factor 9 isoform X2

    UniProtKB/TrEMBL
    A0A8C8BTG4, A0A8C8BZN4
    Related
    ENSOTSP00005001928.2, ENSOTST00005002165.2
    Conserved Domains (3) summary
    cd11975
    Location:7 → 64
    SH3_ARHGEF9; Src homology 3 domain of the Rho guanine nucleotide exchange factor ARHGEF9
    smart00325
    Location:148 → 327
    RhoGEF; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases
    cd01224
    Location:332 → 471
    PH_Collybistin_ASEF; Collybistin/APC-stimulated guanine nucleotide exchange factor pleckstrin homology (PH) domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.