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ddx55 DEAD (Asp-Glu-Ala-Asp) box polypeptide 55 [ Oncorhynchus tshawytscha (Chinook salmon) ]

Gene ID: 112257479, updated on 18-Jun-2024

Summary

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Gene symbol
ddx55
Gene description
DEAD (Asp-Glu-Ala-Asp) box polypeptide 55
See related
Ensembl:ENSOTSG00005042618
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus tshawytscha
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG09
Exon count:
13
Annotation release Status Assembly LG Location
101 current Otsh_v2.0 (GCF_018296145.1) LG09 NC_056437.1 (17503811..17508580, complement)
100 previous assembly Otsh_v1.0 (GCF_002872995.1) Chromosome 9 NC_037105.1 (12399192..12403964, complement)

Linkage Group LG09 - NC_056437.1Genomic Context describing neighboring genes Neighboring gene CAP-GLY domain containing linker protein 1b Neighboring gene elongation of very long chain fatty acids protein 5-like Neighboring gene B-cell CLL/lymphoma 7 protein family member A-like Neighboring gene translation initiation factor eIF-2B subunit alpha Neighboring gene transmembrane emp24 domain-containing protein 2 Neighboring gene tyrosine-protein phosphatase non-receptor type 11

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ATP-dependent RNA helicase DDX55
Names
DEAD-box helicase 55

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus tshawytscha Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Otsh_v2.0 Primary Assembly

Genomic

  1. NC_056437.1 Reference Otsh_v2.0 Primary Assembly

    Range
    17503811..17508580 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024431064.2 → XP_024286832.1  ATP-dependent RNA helicase DDX55

    UniProtKB/TrEMBL
    A0A8C8J8A0, A0A8C8JE85
    Related
    ENSOTSP00005090763.1, ENSOTST00005098509.2
    Conserved Domains (3) summary
    COG0513
    Location:3 → 377
    SrmB; Superfamily II DNA and RNA helicase [Replication, recombination and repair]
    pfam13959
    Location:403 → 462
    DUF4217; Domain of unknown function (DUF4217)
    cl25887
    Location:485 → 590
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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