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LOC112240642 cleavage and polyadenylation specificity factor subunit 4 [ Oncorhynchus tshawytscha (Chinook salmon) ]

Gene ID: 112240642, updated on 18-Jun-2024

Summary

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Gene symbol
LOC112240642
Gene description
cleavage and polyadenylation specificity factor subunit 4
See related
Ensembl:ENSOTSG00005068673
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus tshawytscha
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Also known as
cpsf4
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Genomic context

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Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
101 current Otsh_v2.0 (GCF_018296145.1) Unplaced Scaffold NW_024609514.1 (65296..79577, complement)
100 previous assembly Otsh_v1.0 (GCF_002872995.1) Unplaced Scaffold NW_020130740.1 (30200..40821)

NW_024609514.1Genomic Context describing neighboring genes Neighboring gene equilibrative nucleoside transporter 4-like Neighboring gene ATP synthase membrane subunit f Neighboring gene protein BUD31 homolog Neighboring gene serine hydroxymethyltransferase, cytosolic-like Neighboring gene uncharacterized LOC121844997

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: cleavage and polyadenylation specificity factor subunit 4
Names
cleavage and polyadenylation specific factor 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus tshawytscha Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Otsh_v2.0 Primary Assembly

Genomic

  1. NW_024609514.1 Reference Otsh_v2.0 Primary Assembly

    Range
    65296..79577 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042315645.1 → XP_042171579.1  LOW QUALITY PROTEIN: cleavage and polyadenylation specificity factor subunit 4

    Related
    ENSOTSP00005130789.1, ENSOTST00005134653.1
    Conserved Domains (1) summary
    COG5084
    Location:38 → 208
    YTH1; Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
Nucleotide Protein
Heading Accession and Version

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