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LOC112222064 rho guanine nucleotide exchange factor 10-like protein [ Oncorhynchus tshawytscha (Chinook salmon) ]

Gene ID: 112222064, updated on 18-Jun-2024

Summary

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Gene symbol
LOC112222064
Gene description
rho guanine nucleotide exchange factor 10-like protein
See related
Ensembl:ENSOTSG00005043858
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus tshawytscha
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Also known as
arhgef10l
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Genomic context

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See LOC112222064 in Genome Data Viewer
Location:
chromosome: LG22
Exon count:
31
Annotation release Status Assembly LG Location
101 current Otsh_v2.0 (GCF_018296145.1) LG22 NC_056450.1 (21914070..21944978, complement)
100 previous assembly Otsh_v1.0 (GCF_002872995.1) Chromosome 22 NC_037118.1 (22193709..22224559, complement)

Linkage Group LG22 - NC_056450.1Genomic Context describing neighboring genes Neighboring gene short-chain dehydrogenase/reductase 3 Neighboring gene immunoglobulin superfamily member 21-like Neighboring gene regulator of chromosome condensation 2 Neighboring gene 60S ribosomal protein L22

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables guanyl-nucleotide exchange factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in SREBP signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in actin cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of stress fiber assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
rho guanine nucleotide exchange factor 10-like protein
Names
Rho guanine nucleotide exchange factor 10 like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus tshawytscha Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Otsh_v2.0 Primary Assembly

Genomic

  1. NC_056450.1 Reference Otsh_v2.0 Primary Assembly

    Range
    21914070..21944978 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024384638.2 → XP_024240406.1  rho guanine nucleotide exchange factor 10-like protein isoform X3

    UniProtKB/TrEMBL
    A0A8C8JNN9
    Related
    ENSOTSP00005094051.2, ENSOTST00005101948.2
    Conserved Domains (1) summary
    cd00160
    Location:385 → 569
    RhoGEF; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.

  2. XM_024384636.2 → XP_024240404.1  rho guanine nucleotide exchange factor 10-like protein isoform X1

    UniProtKB/TrEMBL
    A0A8C8JNN9
    Conserved Domains (1) summary
    cd00160
    Location:407 → 591
    RhoGEF; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.

  3. XM_024384639.2 → XP_024240407.1  rho guanine nucleotide exchange factor 10-like protein isoform X4

    UniProtKB/TrEMBL
    A0A8C8JEU5, A0A8C8JNN9
    Related
    ENSOTSP00005094043.1, ENSOTST00005101939.2
    Conserved Domains (1) summary
    cd00160
    Location:380 → 564
    RhoGEF; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.

  4. XM_024384637.2 → XP_024240405.1  rho guanine nucleotide exchange factor 10-like protein isoform X2

    UniProtKB/TrEMBL
    A0A8C8JNN9
    Conserved Domains (1) summary
    cd00160
    Location:407 → 591
    RhoGEF; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.

  5. XM_024384640.2 → XP_024240408.1  rho guanine nucleotide exchange factor 10-like protein isoform X5

    UniProtKB/TrEMBL
    A0A8C8JFK1
    Related
    ENSOTSP00005094058.2, ENSOTST00005101955.2
    Conserved Domains (1) summary
    cd00160
    Location:292 → 476
    RhoGEF; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.

  6. XM_024384641.2 → XP_024240409.1  rho guanine nucleotide exchange factor 10-like protein isoform X6

    UniProtKB/TrEMBL
    A0A8C8JJC1
    Related
    ENSOTSP00005094065.2, ENSOTST00005101962.2
    Conserved Domains (1) summary
    cd00160
    Location:72 → 256
    RhoGEF; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.
Nucleotide Protein
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