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LOC112220989 exosome complex component RRP40 [ Oncorhynchus tshawytscha (Chinook salmon) ]

Gene ID: 112220989, updated on 18-Jun-2024

Summary

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Gene symbol
LOC112220989
Gene description
exosome complex component RRP40
See related
Ensembl:ENSOTSG00005032230
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus tshawytscha
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Also known as
exosc3
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Genomic context

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Location:
chromosome: LG21
Exon count:
4
Annotation release Status Assembly LG Location
101 current Otsh_v2.0 (GCF_018296145.1) LG21 NC_056449.1 (13642683..13645040, complement)
100 previous assembly Otsh_v1.0 (GCF_002872995.1) Chromosome 21 NC_037117.1 (14563497..14565988, complement)

Linkage Group LG21 - NC_056449.1Genomic Context describing neighboring genes Neighboring gene nitric oxide-associated protein 1-like Neighboring gene RE1-silencing transcription factor B Neighboring gene beta-1,4-galactosyltransferase 1 Neighboring gene uncharacterized LOC121840371 Neighboring gene nipsnap homolog 3A (C. elegans)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in CUT catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in TRAMP-dependent tRNA surveillance pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in U4 snRNA 3'-end processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear polyadenylation-dependent rRNA catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in poly(A)-dependent snoRNA 3'-end processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cytoplasmic exosome (RNase complex) IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of nuclear exosome (RNase complex) IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
exosome complex component RRP40
Names
exosome component 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus tshawytscha Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Otsh_v2.0 Primary Assembly

Genomic

  1. NC_056449.1 Reference Otsh_v2.0 Primary Assembly

    Range
    13642683..13645040 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024383020.2 → XP_024238788.1  exosome complex component RRP40

    UniProtKB/TrEMBL
    A0A8C8HQG2
    Related
    ENSOTSP00005067694.1, ENSOTST00005073494.2
    Conserved Domains (2) summary
    cd05790
    Location:72 → 157
    S1_Rrp40; Rrp40 S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Rrp4 protein is a subunit of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in ...
    cl26026
    Location:9 → 224
    ECR1_N; Exosome complex exonuclease RRP4 N-terminal region
Nucleotide Protein
Heading Accession and Version

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