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tmem17 transmembrane protein 17 [ Oncorhynchus tshawytscha (Chinook salmon) ]

Gene ID: 112218690, updated on 18-Jun-2024

Summary

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Gene symbol
tmem17
Gene description
transmembrane protein 17
See related
Ensembl:ENSOTSG00005034383
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus tshawytscha
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG19
Exon count:
6
Annotation release Status Assembly LG Location
101 current Otsh_v2.0 (GCF_018296145.1) LG19 NC_056447.1 (36449211..36454087, complement)
100 previous assembly Otsh_v1.0 (GCF_002872995.1) Chromosome 19 NC_037115.1 (36551143..36556024, complement)

Linkage Group LG19 - NC_056447.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 287 Neighboring gene cytosolic carboxypeptidase 2-like Neighboring gene tripartite motif-containing protein 16 Neighboring gene cilia- and flagella-associated protein 44

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in non-motile cilium assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in ciliary transition zone IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transmembrane protein 17B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus tshawytscha Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Otsh_v2.0 Primary Assembly

Genomic

  1. NC_056447.1 Reference Otsh_v2.0 Primary Assembly

    Range
    36449211..36454087 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024379716.2 → XP_024235484.1  transmembrane protein 17B

    UniProtKB/TrEMBL
    A0A8C8I2B6
    Conserved Domains (1) summary
    pfam09799
    Location:53 → 156
    Transmemb_17; Predicted membrane protein

  2. XM_024379715.2 → XP_024235483.1  transmembrane protein 17B

    UniProtKB/TrEMBL
    A0A8C8I2B6
    Related
    ENSOTSP00005072831.1, ENSOTST00005078938.2
    Conserved Domains (1) summary
    pfam09799
    Location:53 → 156
    Transmemb_17; Predicted membrane protein
Nucleotide Protein
Heading Accession and Version

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