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LOC112163233 nucleus accumbens-associated protein 2 [ Oryzias melastigma (Indian medaka) ]

Gene ID: 112163233, updated on 10-Jul-2024

Summary

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Gene symbol
LOC112163233
Gene description
nucleus accumbens-associated protein 2
See related
EnsemblRapid:ENSOMEG00005002712
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias melastigma
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Also known as
nacc2
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG12
Exon count:
8
Annotation release Status Assembly LG Location
101 current ASM292280v2 (GCF_002922805.2) LG12 NC_050523.1 (10581341..10611442, complement)
100 previous assembly Om_v0.7.RACA (GCF_002922805.1) Unplaced Scaffold NW_020096103.1 (10580478..10611579, complement)

Linkage Group LG12 - NC_050523.1Genomic Context describing neighboring genes Neighboring gene family with sequence similarity 78 member Ab Neighboring gene nucleoporin 214 Neighboring gene transmembrane protein 250 Neighboring gene uncharacterized LOC118599411

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Tissue-specific transcriptome assemblies of the marine medaka Oryzias melastigma and comparative analysis with the freshwater medaka Oryzias latipes. Lai KP, et al. BMC Genomics, 2015 Feb 27. PMID 25765076, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nucleus accumbens-associated protein 2
Names
NACC family member 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias melastigma Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM292280v2 Primary Assembly

Genomic

  1. NC_050523.1 Reference ASM292280v2 Primary Assembly

    Range
    10581341..10611442 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024299529.2 → XP_024155297.1  nucleus accumbens-associated protein 2

    UniProtKB/TrEMBL
    A0A3B3D4Z1, A0A834FFF7
    Related
    ENSOMEP00005004503.1, ENSOMET00005005307.1
    Conserved Domains (2) summary
    smart01025
    Location:377 → 454
    BEN; The BEN domain is found in diverse animal proteins
    pfam00651
    Location:20 → 114
    BTB; BTB/POZ domain

  2. XM_024299530.2 → XP_024155298.1  nucleus accumbens-associated protein 2

    UniProtKB/TrEMBL
    A0A3B3D4Z1, A0A834FFF7
    Conserved Domains (2) summary
    smart01025
    Location:377 → 454
    BEN; The BEN domain is found in diverse animal proteins
    pfam00651
    Location:20 → 114
    BTB; BTB/POZ domain
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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