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npm3 nucleophosmin/nucleoplasmin, 3 [ Oryzias melastigma (Indian medaka) ]

Gene ID: 112162298, updated on 13-Jul-2024

Summary

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Gene symbol
npm3
Gene description
nucleophosmin/nucleoplasmin, 3
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias melastigma
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: LG15
Exon count:
5
Annotation release Status Assembly LG Location
101 current ASM292280v2 (GCF_002922805.2) LG15 NC_050526.1 (22881474..22883732)
100 previous assembly Om_v0.7.RACA (GCF_002922805.1) Unplaced Scaffold NW_020096100.1 (21994946..21997198)

Linkage Group LG15 - NC_050526.1Genomic Context describing neighboring genes Neighboring gene PPARG related coactivator 1 Neighboring gene small nucleolar RNA SNORA50 Neighboring gene O-GlcNAcase Neighboring gene E3 ubiquitin-protein ligase TRIM8 Neighboring gene suppressor of fused homolog (Drosophila)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Tissue-specific transcriptome assemblies of the marine medaka Oryzias melastigma and comparative analysis with the freshwater medaka Oryzias latipes. Lai KP, et al. BMC Genomics, 2015 Feb 27. PMID 25765076, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables chromatin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nucleoplasmin-3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias melastigma Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM292280v2 Primary Assembly

Genomic

  1. NC_050526.1 Reference ASM292280v2 Primary Assembly

    Range
    22881474..22883732
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024298107.2 → XP_024153875.1  nucleoplasmin-3

    UniProtKB/TrEMBL
    A0A3B3B849
    Conserved Domains (1) summary
    pfam03066
    Location:23 → 124
    Nucleoplasmin; Nucleoplasmin/nucleophosmin domain
Nucleotide Protein Strain
Heading Accession and Version

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