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stox1 storkhead box 1 [ Oryzias melastigma (Indian medaka) ]

Gene ID: 112162249, updated on 10-Jul-2024

Summary

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Gene symbol
stox1
Gene description
storkhead box 1
See related
EnsemblRapid:ENSOMEG00005018394
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias melastigma
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
human zebrafish all
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Genomic context

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See stox1 in Genome Data Viewer
Location:
chromosome: LG15
Exon count:
4
Annotation release Status Assembly LG Location
101 current ASM292280v2 (GCF_002922805.2) LG15 NC_050526.1 (21618910..21649833, complement)
100 previous assembly Om_v0.7.RACA (GCF_002922805.1) Unplaced Scaffold NW_020096100.1 (20733458..20763196, complement)

Linkage Group LG15 - NC_050526.1Genomic Context describing neighboring genes Neighboring gene Transmembrane protein 150A-like Neighboring gene uncharacterized LOC112161764 Neighboring gene finTRIM family, member 14-like Neighboring gene small nucleolar RNA SNORD98 Neighboring gene cell division cycle and apoptosis regulator 1 Neighboring gene uncharacterized LOC112161797 Neighboring gene uncharacterized LOC112161796

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Tissue-specific transcriptome assemblies of the marine medaka Oryzias melastigma and comparative analysis with the freshwater medaka Oryzias latipes. Lai KP, et al. BMC Genomics, 2015 Feb 27. PMID 25765076, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription activator activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
storkhead-box protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias melastigma Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM292280v2 Primary Assembly

Genomic

  1. NC_050526.1 Reference ASM292280v2 Primary Assembly

    Range
    21618910..21649833 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024298008.2 → XP_024153776.1  storkhead-box protein 1

    UniProtKB/TrEMBL
    A0A3B3BD21
    Related
    ENSOMEP00005041222.1, ENSOMET00005046427.1
    Conserved Domains (1) summary
    pfam10264
    Location:120 → 195
    Stork_head; Winged helix Storkhead-box1 domain
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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