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bsdc1 BSD domain containing 1 [ Oryzias melastigma (Indian medaka) ]

Gene ID: 112161094, updated on 10-Jul-2024

Summary

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Gene symbol
bsdc1
Gene description
BSD domain containing 1
See related
EnsemblRapid:ENSOMEG00005022196
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias melastigma
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG3
Exon count:
11
Annotation release Status Assembly LG Location
101 current ASM292280v2 (GCF_002922805.2) LG3 NC_050514.1 (1152995..1160251)
100 previous assembly Om_v0.7.RACA (GCF_002922805.1) Unplaced Scaffold NW_020096099.1 (30887569..30894246)

Linkage Group LG3 - NC_050514.1Genomic Context describing neighboring genes Neighboring gene fibronectin type III domain-containing protein 5 Neighboring gene uncharacterized LOC118600041 Neighboring gene oligodendrocyte transcription factor 4 Neighboring gene MARCKS-like 1a Neighboring gene gap junction beta-5 protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Tissue-specific transcriptome assemblies of the marine medaka Oryzias melastigma and comparative analysis with the freshwater medaka Oryzias latipes. Lai KP, et al. BMC Genomics, 2015 Feb 27. PMID 25765076, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
BSD domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias melastigma Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM292280v2 Primary Assembly

Genomic

  1. NC_050514.1 Reference ASM292280v2 Primary Assembly

    Range
    1152995..1160251
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024296092.2 → XP_024151860.1  BSD domain-containing protein 1

    UniProtKB/TrEMBL
    A0A3B3BCH9, A0A834BYK0
    Related
    ENSOMEP00005046691.1, ENSOMET00005054899.1
    Conserved Domains (2) summary
    cl19731
    Location:237 → 366
    SipA; Salmonella invasion protein A
    pfam03909
    Location:144 → 200
    BSD; BSD domain
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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