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slc13a3 solute carrier family 13 member 3 [ Oryzias melastigma (Indian medaka) ]

Gene ID: 112159820, updated on 15-Mar-2024

Summary

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Gene symbol
slc13a3
Gene description
solute carrier family 13 member 3
See related
Ensembl:ENSOMEG00000022406
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias melastigma
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG7
Exon count:
13
Annotation release Status Assembly LG Location
101 current ASM292280v2 (GCF_002922805.2) LG7 NC_050518.1 (17902968..17913317)
100 previous assembly Om_v0.7.RACA (GCF_002922805.1) Unplaced Scaffold NW_020096096.1 (23370461..23380737)

Linkage Group LG7 - NC_050518.1Genomic Context describing neighboring genes Neighboring gene transcription factor 15 Neighboring gene uncharacterized LOC118598959 Neighboring gene osteoclast stimulatory transmembrane protein Neighboring gene thyrotropin-releasing hormone receptor

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Tissue-specific transcriptome assemblies of the marine medaka Oryzias melastigma and comparative analysis with the freshwater medaka Oryzias latipes. Lai KP, et al. BMC Genomics, 2015 Feb 27. PMID 25765076, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables citrate transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sodium:dicarboxylate symporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables succinate transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in citrate transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in monoatomic anion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
solute carrier family 13 member 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias melastigma Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM292280v2 Primary Assembly

Genomic

  1. NC_050518.1 Reference ASM292280v2 Primary Assembly

    Range
    17902968..17913317
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024294127.2 → XP_024149895.1  solute carrier family 13 member 3

    UniProtKB/TrEMBL
    A0A3B3CRM6, A0A834C4Z5
    Related
    ENSOMEP00000020528.1
    Conserved Domains (1) summary
    cd01115
    Location:41 → 569
    SLC13_permease; Permease SLC13 (solute carrier 13). The sodium/dicarboxylate cotransporter NaDC-1 has been shown to translocate Krebs cycle intermediates such as succinate, citrate, and alpha-ketoglutarate across plasma membranes rabbit, human, and rat kidney. It is ...
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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