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ccn2 cellular communication network factor 2 [ Oryzias melastigma (Indian medaka) ]

Gene ID: 112157585, updated on 10-Jul-2024

Summary

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Gene symbol
ccn2
Gene description
cellular communication network factor 2
See related
EnsemblRapid:ENSOMEG00005005434
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias melastigma
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Also known as
ctgf
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Genomic context

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Location:
chromosome: LG24
Exon count:
5
Annotation release Status Assembly LG Location
101 current ASM292280v2 (GCF_002922805.2) LG24 NC_050535.1 (24260259..24262730)
100 previous assembly Om_v0.7.RACA (GCF_002922805.1) Unplaced Scaffold NW_020096095.1 (433160..435630, complement)

Linkage Group LG24 - NC_050535.1Genomic Context describing neighboring genes Neighboring gene protein LEG1 homolog Neighboring gene syntaxin 7-like Neighboring gene phospholipase B1, membrane-associated Neighboring gene chromogranin A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Tissue-specific transcriptome assemblies of the marine medaka Oryzias melastigma and comparative analysis with the freshwater medaka Oryzias latipes. Lai KP, et al. BMC Genomics, 2015 Feb 27. PMID 25765076, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables heparin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables integrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
CCN family member 2
Names
connective tissue growth factor

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias melastigma Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM292280v2 Primary Assembly

Genomic

  1. NC_050535.1 Reference ASM292280v2 Primary Assembly

    Range
    24260259..24262730
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024290388.2 → XP_024146156.1  CCN family member 2

    UniProtKB/TrEMBL
    A0A3B3BC18, A0A3B3D2D9
    Related
    ENSOMEP00005010858.1, ENSOMET00005012201.1
    Conserved Domains (4) summary
    smart00214
    Location:100 → 159
    VWC; von Willebrand factor (vWF) type C domain
    pfam00219
    Location:27 → 79
    IGFBP; Insulin-like growth factor binding protein
    pfam19035
    Location:196 → 239
    TSP1_CCN; CCN3 Nov like TSP1 domain
    cl21545
    Location:250 → 341
    GHB_like; Glycoprotein hormone beta chain homologues
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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