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ntn4 netrin 4 [ Oryzias melastigma (Indian medaka) ]

Gene ID: 112155020, updated on 10-Jul-2024

Summary

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Gene symbol
ntn4
Gene description
netrin 4
See related
EnsemblRapid:ENSOMEG00005015682
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias melastigma
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
human zebrafish all
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Genomic context

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See ntn4 in Genome Data Viewer
Location:
chromosome: LG23
Exon count:
10
Annotation release Status Assembly LG Location
101 current ASM292280v2 (GCF_002922805.2) LG23 NC_050534.1 (19047939..19078244)
100 previous assembly Om_v0.7.RACA (GCF_002922805.1) Unplaced Scaffold NW_020096075.1 (15759808..15790099)

Linkage Group LG23 - NC_050534.1Genomic Context describing neighboring genes Neighboring gene tetraspanin-9 Neighboring gene amidohydrolase domain containing 1 Neighboring gene uncharacterized LOC112155034 Neighboring gene small nuclear ribonucleoprotein polypeptide F Neighboring gene ubiquitin specific peptidase 44 Neighboring gene methionine aminopeptidase 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Tissue-specific transcriptome assemblies of the marine medaka Oryzias melastigma and comparative analysis with the freshwater medaka Oryzias latipes. Lai KP, et al. BMC Genomics, 2015 Feb 27. PMID 25765076, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in basement membrane assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in substrate adhesion-dependent cell spreading IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of laminin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
netrin-4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias melastigma Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM292280v2 Primary Assembly

Genomic

  1. NC_050534.1 Reference ASM292280v2 Primary Assembly

    Range
    19047939..19078244
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024286383.2 → XP_024142151.1  netrin-4

    UniProtKB/TrEMBL
    A0A3B3B934
    Related
    ENSOMEP00005035557.1, ENSOMET00005039538.1
    Conserved Domains (4) summary
    smart00180
    Location:397 → 448
    EGF_Lam; Laminin-type epidermal growth factor-like domai
    cd00055
    Location:335 → 389
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    pfam00055
    Location:44 → 264
    Laminin_N; Laminin N-terminal (Domain VI)
    cl02512
    Location:511 → 622
    NTR_like; NTR_like domain; a beta barrel with an oligosaccharide/oligonucleotide-binding fold found in netrins, complement proteins, tissue inhibitors of metalloproteases (TIMP), and procollagen C-proteinase enhancers (PCOLCE), amongst others. In netrins, the ...
Nucleotide Protein Strain
Heading Accession and Version

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