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smarcd2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2 [ Oryzias melastigma (Indian medaka) ]

Gene ID: 112154539, updated on 15-Mar-2024

Summary

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Gene symbol
smarcd2
Gene description
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2
See related
Ensembl:ENSOMEG00000022684
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias melastigma
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: LG19
Exon count:
13
Annotation release Status Assembly LG Location
101 current ASM292280v2 (GCF_002922805.2) LG19 NC_050530.1 (7972244..7985453, complement)
100 previous assembly Om_v0.7.RACA (GCF_002922805.1) Unplaced Scaffold NW_020096090.1 (6433028..6445493, complement)

Linkage Group LG19 - NC_050530.1Genomic Context describing neighboring genes Neighboring gene membrane palmitoylated protein 3b Neighboring gene proteasome 26S subunit, ATPase 5 Neighboring gene uncharacterized LOC112154640 Neighboring gene nucleolar transcription factor 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Tissue-specific transcriptome assemblies of the marine medaka Oryzias melastigma and comparative analysis with the freshwater medaka Oryzias latipes. Lai KP, et al. BMC Genomics, 2015 Feb 27. PMID 25765076, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of SWI/SNF complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias melastigma Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM292280v2 Primary Assembly

Genomic

  1. NC_050530.1 Reference ASM292280v2 Primary Assembly

    Range
    7972244..7985453 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024285552.2 → XP_024141320.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2

    UniProtKB/TrEMBL
    A0A3B3CSF0
    Related
    ENSOMEP00000020782.1
    Conserved Domains (1) summary
    cd17675
    Location:274 → 353
    SWIB_BAF60B; SWIB domain found in BRG1-associated factor 60B (BAF60B) and similar proteins
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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