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tasora transcription activation suppressor a [ Oryzias melastigma (Indian medaka) ]

Gene ID: 112151983, updated on 14-Dec-2023

Summary

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Gene symbol
tasora
Gene description
transcription activation suppressor a
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias melastigma
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Also known as
tasor; fam208a
Annotation information
Annotation category: partial on reference assembly
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Genomic context

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Location:
chromosome: LG6
Exon count:
23
Annotation release Status Assembly LG Location
101 current ASM292280v2 (GCF_002922805.2) LG6 NC_050517.1 (17744682..17801977)
100 previous assembly Om_v0.7.RACA (GCF_002922805.1) Unplaced Scaffold NW_020096088.1 (17353220..17411421, complement)

Linkage Group LG6 - NC_050517.1Genomic Context describing neighboring genes Neighboring gene V-type proton ATPase subunit S1 Neighboring gene uncharacterized LOC112152014 Neighboring gene ribosomal protein S23 Neighboring gene coiled-coil domain containing 66 Neighboring gene lactase-like b Neighboring gene zwilch kinetochore protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Tissue-specific transcriptome assemblies of the marine medaka Oryzias melastigma and comparative analysis with the freshwater medaka Oryzias latipes. Lai KP, et al. BMC Genomics, 2015 Feb 27. PMID 25765076, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chromatin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of gene expression, epigenetic IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of DNA methylation-dependent heterochromatin formation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein localization to heterochromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of heterochromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein TASOR
Names
family with sequence similarity 208 member A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias melastigma Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM292280v2 Primary Assembly

Genomic

  1. NC_050517.1 Reference ASM292280v2 Primary Assembly

    Range
    17744682..17801977
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024281166.2 → XP_024136934.1  protein TASOR

    Conserved Domains (2) summary
    pfam12509
    Location:143 → 286
    DUF3715; Protein of unknown function (DUF3715)
    cl26464
    Location:1607 → 1820
    Atrophin-1; Atrophin-1 family
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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