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LOC112147002 dynein assembly factor 5, axonemal [ Oryzias melastigma (Indian medaka) ]

Gene ID: 112147002, updated on 10-Jul-2024

Summary

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Gene symbol
LOC112147002
Gene description
dynein assembly factor 5, axonemal
See related
EnsemblRapid:ENSOMEG00005009641
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias melastigma
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Also known as
dnaaf5
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Genomic context

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See LOC112147002 in Genome Data Viewer
Location:
chromosome: LG8
Exon count:
14
Annotation release Status Assembly LG Location
101 current ASM292280v2 (GCF_002922805.2) LG8 NC_050519.1 (11878017..11899144, complement)
100 previous assembly Om_v0.7.RACA (GCF_002922805.1) Unplaced Scaffold NW_020096082.1 (11872659..11893791)

Linkage Group LG8 - NC_050519.1Genomic Context describing neighboring genes Neighboring gene CREB binding protein b Neighboring gene uncharacterized LOC118599058 Neighboring gene MAPK regulated corepressor interacting protein 2 Neighboring gene TNF receptor-associated protein 1 Neighboring gene protein kinase, cAMP-dependent, regulatory, type I, beta Neighboring gene platelet-derived growth factor alpha polypeptide b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Tissue-specific transcriptome assemblies of the marine medaka Oryzias melastigma and comparative analysis with the freshwater medaka Oryzias latipes. Lai KP, et al. BMC Genomics, 2015 Feb 27. PMID 25765076, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables dynein intermediate chain binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cilium movement IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in inner dynein arm assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in outer dynein arm assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
dynein assembly factor 5, axonemal
Names
dynein axonemal assembly factor 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias melastigma Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM292280v2 Primary Assembly

Genomic

  1. NC_050519.1 Reference ASM292280v2 Primary Assembly

    Range
    11878017..11899144 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024273114.2 → XP_024128882.1  dynein assembly factor 5, axonemal

    UniProtKB/TrEMBL
    A0A3B3DC77
    Related
    ENSOMEP00005021517.1, ENSOMET00005023649.1
    Conserved Domains (2) summary
    sd00044
    Location:62 → 90
    HEAT; HEAT repeat [structural motif]
    pfam13646
    Location:145 → 248
    HEAT_2; HEAT repeats

RNA

  1. XR_002919357.2 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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