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ndrg3a ndrg family member 3a [ Oryzias melastigma (Indian medaka) ]

Gene ID: 112144851, updated on 15-Mar-2024

Summary

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Gene symbol
ndrg3a
Gene description
ndrg family member 3a
See related
Ensembl:ENSOMEG00000000639
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias melastigma
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Also known as
ndrg3
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: LG5
Exon count:
19
Annotation release Status Assembly LG Location
101 current ASM292280v2 (GCF_002922805.2) LG5 NC_050516.1 (350458..386419, complement)
100 previous assembly Om_v0.7.RACA (GCF_002922805.1) Unplaced Scaffold NW_020096081.1 (29415769..29451413)

Linkage Group LG5 - NC_050516.1Genomic Context describing neighboring genes Neighboring gene transient receptor potential cation channel, subfamily C, member 4 associated protein a Neighboring gene Src like adaptor 2a Neighboring gene PHD finger protein 20, a Neighboring gene Rho GTPase activating protein 46a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Tissue-specific transcriptome assemblies of the marine medaka Oryzias melastigma and comparative analysis with the freshwater medaka Oryzias latipes. Lai KP, et al. BMC Genomics, 2015 Feb 27. PMID 25765076, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein NDRG3a
Names
NDRG family member 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias melastigma Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM292280v2 Primary Assembly

Genomic

  1. NC_050516.1 Reference ASM292280v2 Primary Assembly

    Range
    350458..386419 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024269682.2 → XP_024125450.1  protein NDRG3a isoform X4

    UniProtKB/TrEMBL
    A0A3B3E1R9
    Conserved Domains (1) summary
    pfam03096
    Location:31 → 316
    Ndr; Ndr family

  2. XM_024269681.2 → XP_024125449.1  protein NDRG3a isoform X4

    UniProtKB/TrEMBL
    A0A3B3E1R9
    Conserved Domains (1) summary
    pfam03096
    Location:31 → 316
    Ndr; Ndr family

  3. XM_036211774.1 → XP_036067667.1  protein NDRG3a isoform X2

    UniProtKB/TrEMBL
    A0A3B3E1R9
    Conserved Domains (1) summary
    pfam03096
    Location:49 → 334
    Ndr; Ndr family

  4. XM_036211775.1 → XP_036067668.1  protein NDRG3a isoform X3

    UniProtKB/TrEMBL
    A0A3B3E1R9
    Conserved Domains (1) summary
    pfam03096
    Location:50 → 335
    Ndr; Ndr family

  5. XM_036211773.1 → XP_036067666.1  protein NDRG3a isoform X1

    UniProtKB/TrEMBL
    A0A3B3E1R9
    Conserved Domains (1) summary
    pfam03096
    Location:50 → 335
    Ndr; Ndr family

  6. XM_024269684.1 → XP_024125452.1  protein NDRG3a isoform X5

    UniProtKB/TrEMBL
    A0A3B3E1R4
    Related
    ENSOMEP00000036293.1, ENSOMET00000031639.1
    Conserved Domains (1) summary
    pfam03096
    Location:18 → 303
    Ndr; Ndr family
Nucleotide Protein Strain
Heading Accession and Version

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