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zgc:112982 uncharacterized LOC112142278 [ Oryzias melastigma (Indian medaka) ]

Gene ID: 112142278, updated on 10-Jul-2024

Summary

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Gene symbol
zgc:112982
Gene description
uncharacterized LOC112142278
See related
EnsemblRapid:ENSOMEG00005003237
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias melastigma
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Also known as
bclaf3
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
101 current ASM292280v2 (GCF_002922805.2) Unplaced Scaffold NW_023416925.1 (66872..77682, complement)
100 previous assembly Om_v0.7.RACA (GCF_002922805.1) Unplaced Scaffold NW_020104469.1 (66872..77675, complement)

NW_023416925.1Genomic Context describing neighboring genes Neighboring gene Ig kappa-b4 chain C region-like Neighboring gene un-named hu7910 Neighboring gene uncharacterized LOC112142279 Neighboring gene uncharacterized LOC112142282 Neighboring gene signal sequence receptor, alpha

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Tissue-specific transcriptome assemblies of the marine medaka Oryzias melastigma and comparative analysis with the freshwater medaka Oryzias latipes. Lai KP, et al. BMC Genomics, 2015 Feb 27. PMID 25765076, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coregulator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of mediator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
BCLAF1 and THRAP3 family member 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias melastigma Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM292280v2 Primary Assembly

Genomic

  1. NW_023416925.1 Reference ASM292280v2 Primary Assembly

    Range
    66872..77682 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024265535.2 → XP_024121303.1  BCLAF1 and THRAP3 family member 3

    UniProtKB/TrEMBL
    A0A3B3BHW8, A0A3B3D6K2
    Related
    ENSOMEP00005005348.1, ENSOMET00005006461.1
    Conserved Domains (1) summary
    pfam15440
    Location:412 → 563
    THRAP3_BCLAF1; THRAP3/BCLAF1 family
Nucleotide Protein Strain
Heading Accession and Version

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