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btbd9 BTB (POZ) domain containing 9 [ Oryzias melastigma (Indian medaka) ]

Gene ID: 112140968, updated on 10-Jul-2024

Summary

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Gene symbol
btbd9
Gene description
BTB (POZ) domain containing 9
See related
EnsemblRapid:ENSOMEG00005002805
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias melastigma
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG15
Exon count:
11
Annotation release Status Assembly LG Location
101 current ASM292280v2 (GCF_002922805.2) LG15 NC_050526.1 (30921662..30929649, complement)
100 previous assembly Om_v0.7.RACA (GCF_002922805.1) Unplaced Scaffold NW_020102025.1 (338297..346298)

Linkage Group LG15 - NC_050526.1Genomic Context describing neighboring genes Neighboring gene zinc metalloproteinase nas-13 Neighboring gene AN1-type zinc finger protein 3 Neighboring gene polypeptide N-acetylgalactosaminyltransferase 14-like Neighboring gene vegetative cell wall protein gp1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Tissue-specific transcriptome assemblies of the marine medaka Oryzias melastigma and comparative analysis with the freshwater medaka Oryzias latipes. Lai KP, et al. BMC Genomics, 2015 Feb 27. PMID 25765076, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in adult locomotory behavior IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in circadian behavior IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in modulation of chemical synaptic transmission IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
BTB/POZ domain-containing protein 9
Names
BTB domain containing 9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias melastigma Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM292280v2 Primary Assembly

Genomic

  1. NC_050526.1 Reference ASM292280v2 Primary Assembly

    Range
    30921662..30929649 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024264003.2 → XP_024119771.1  BTB/POZ domain-containing protein 9

    UniProtKB/TrEMBL
    A0A3B3CMN3
    Related
    ENSOMEP00005004698.1, ENSOMET00005005517.1
    Conserved Domains (3) summary
    cd18287
    Location:14 → 133
    BTB_POZ_BTBD9; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in BTB/POZ domain-containing protein 9 (BTBD9)
    cd14822
    Location:137 → 236
    BACK_BTBD9; BACK (BTB and C-terminal Kelch) domain found in BTB/POZ domain-containing protein 9 (BTBD9)
    pfam00754
    Location:293 → 405
    F5_F8_type_C; F5/8 type C domain
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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