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LOC112137700 syntaxin-12 [ Oryzias melastigma (Indian medaka) ]

Gene ID: 112137700, updated on 10-Jul-2024

Summary

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Gene symbol
LOC112137700
Gene description
syntaxin-12
See related
EnsemblRapid:ENSOMEG00005029713
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias melastigma
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Also known as
stx12
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Genomic context

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Location:
chromosome: LG11
Exon count:
10
Annotation release Status Assembly LG Location
101 current ASM292280v2 (GCF_002922805.2) LG11 NC_050522.1 (14332384..14340072, complement)
100 previous assembly Om_v0.7.RACA (GCF_002922805.1) Unplaced Scaffold NW_020096076.1 (13800267..13807955)

Linkage Group LG11 - NC_050522.1Genomic Context describing neighboring genes Neighboring gene riboflavin transporter 2 Neighboring gene nuclear factor of activated T-cells, cytoplasmic 1 Neighboring gene immunoglobulin superfamily DCC subclass member 3 Neighboring gene death-associated protein kinase 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Tissue-specific transcriptome assemblies of the marine medaka Oryzias melastigma and comparative analysis with the freshwater medaka Oryzias latipes. Lai KP, et al. BMC Genomics, 2015 Feb 27. PMID 25765076, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables SNAP receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables SNARE binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle docking IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle fusion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of SNARE complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endomembrane system IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in postsynaptic recycling endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synaptic vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synaptic vesicle membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
syntaxin-12

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias melastigma Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM292280v2 Primary Assembly

Genomic

  1. NC_050522.1 Reference ASM292280v2 Primary Assembly

    Range
    14332384..14340072 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024260125.1 → XP_024115893.1  syntaxin-12

    UniProtKB/TrEMBL
    A0A3B3CJH0, A0A834CPJ9
    Related
    ENSOMEP00005056625.1, ENSOMET00005071388.1
    Conserved Domains (2) summary
    cd15876
    Location:174 → 240
    SNARE_syntaxin12; SNARE motif of syntaxin 12
    pfam14523
    Location:23 → 125
    Syntaxin_2; Syntaxin-like protein
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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