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scfd2 sec1 family domain containing 2 [ Oryzias melastigma (Indian medaka) ]

Gene ID: 112136964, updated on 10-Jul-2024

Summary

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Gene symbol
scfd2
Gene description
sec1 family domain containing 2
See related
EnsemblRapid:ENSOMEG00005000301
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias melastigma
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG4
Exon count:
10
Annotation release Status Assembly LG Location
101 current ASM292280v2 (GCF_002922805.2) LG4 NC_050515.1 (30932425..31067301)
100 previous assembly Om_v0.7.RACA (GCF_002922805.1) Unplaced Scaffold NW_020096107.1 (623246..758099, complement)

Linkage Group LG4 - NC_050515.1Genomic Context describing neighboring genes Neighboring gene ligand of numb-protein X 1 Neighboring gene FIP1 like 1a (S. cerevisiae) Neighboring gene disabled homolog 1-like Neighboring gene RAS-like, family 11, member B Neighboring gene ubiquitin specific peptidase 46

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Tissue-specific transcriptome assemblies of the marine medaka Oryzias melastigma and comparative analysis with the freshwater medaka Oryzias latipes. Lai KP, et al. BMC Genomics, 2015 Feb 27. PMID 25765076, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sec1 family domain-containing protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias melastigma Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM292280v2 Primary Assembly

Genomic

  1. NC_050515.1 Reference ASM292280v2 Primary Assembly

    Range
    30932425..31067301
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024259035.2 → XP_024114803.1  sec1 family domain-containing protein 2

    UniProtKB/TrEMBL
    A0A3B3CB14, A0A834F150
    Related
    ENSOMEP00005000590.1, ENSOMET00005000661.1
    Conserved Domains (1) summary
    cl15415
    Location:576 → 669
    Sec1; Sec1 family
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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