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chka choline kinase alpha [ Oryzias melastigma (Indian medaka) ]

Gene ID: 112136871, updated on 12-Sep-2024

Summary

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Gene symbol
chka
Gene description
choline kinase alpha
See related
EnsemblRapid:ENSOMEG00005016020
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias melastigma
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: LG6
Exon count:
12
Annotation release Status Assembly LG Location
101 current ASM292280v2 (GCF_002922805.2) LG6 NC_050517.1 (6007711..6034866)
100 previous assembly Om_v0.7.RACA (GCF_002922805.1) Unplaced Scaffold NW_020096107.1 (3474392..3501561)

Linkage Group LG6 - NC_050517.1Genomic Context describing neighboring genes Neighboring gene aminopeptidase N Neighboring gene uncharacterized LOC118598827 Neighboring gene uncharacterized LOC112137053 Neighboring gene family with sequence similarity 169 member B Neighboring gene lactate dehydrogenase D

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Tissue-specific transcriptome assemblies of the marine medaka Oryzias melastigma and comparative analysis with the freshwater medaka Oryzias latipes. Lai KP, et al. BMC Genomics, 2015 Feb 27. PMID 25765076, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables choline kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ethanolamine kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in CDP-choline pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phosphatidylethanolamine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
choline kinase alpha

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias melastigma Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM292280v2 Primary Assembly

Genomic

  1. NC_050517.1 Reference ASM292280v2 Primary Assembly

    Range
    6007711..6034866
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024258829.2 → XP_024114597.1  choline kinase alpha isoform X1

    UniProtKB/TrEMBL
    A0A3B3BV91
    Related
    ENSOMEP00005036591.1, ENSOMET00005040575.1
    Conserved Domains (1) summary
    cd05156
    Location:74 → 415
    ChoK_euk; Euykaryotic Choline Kinase

  2. XM_024258830.2 → XP_024114598.1  choline kinase alpha isoform X2

    UniProtKB/TrEMBL
    A0A3B3BTC1
    Conserved Domains (1) summary
    cd05156
    Location:74 → 397
    ChoK_euk; Euykaryotic Choline Kinase
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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