U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

fxn frataxin [ Oryzias melastigma (Indian medaka) ]

Gene ID: 112136406, updated on 10-Jul-2024

Summary

Go to the top of the page Help
Gene symbol
fxn
Gene description
frataxin
See related
EnsemblRapid:ENSOMEG00005013403
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias melastigma
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
human zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: LG9
Exon count:
5
Annotation release Status Assembly LG Location
101 current ASM292280v2 (GCF_002922805.2) LG9 NC_050520.1 (1002253..1004554, complement)
100 previous assembly Om_v0.7.RACA (GCF_002922805.1) Unplaced Scaffold NW_020096105.1 (719533..721320)

Linkage Group LG9 - NC_050520.1Genomic Context describing neighboring genes Neighboring gene RUN and SH3 domain containing 2 Neighboring gene serine/threonine-protein phosphatase 6 catalytic subunit Neighboring gene formimidoyltransferase cyclodeaminase Neighboring gene duodenase-1

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Tissue-specific transcriptome assemblies of the marine medaka Oryzias melastigma and comparative analysis with the freshwater medaka Oryzias latipes. Lai KP, et al. BMC Genomics, 2015 Feb 27. PMID 25765076, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 2 iron, 2 sulfur cluster binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ferric iron binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ferrous iron binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ferroxidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables iron chaperone activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular iron ion homeostasis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in iron incorporation into metallo-sulfur cluster IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
frataxin, mitochondrial

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Oryzias melastigma Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM292280v2 Primary Assembly

Genomic

  1. NC_050520.1 Reference ASM292280v2 Primary Assembly

    Range
    1002253..1004554 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024258094.2 → XP_024113862.1  frataxin, mitochondrial

    Related
    ENSOMEP00005030651.1, ENSOMET00005033672.1
    Conserved Domains (1) summary
    TIGR03422
    Location:86 → 183
    mito_frataxin; frataxin
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.