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LOC112117532 epidermal growth factor-like protein 6 [ Terrapene triunguis (Three-toed box turtle) ]

Gene ID: 112117532, updated on 19-May-2024

Summary

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Gene symbol
LOC112117532
Gene description
epidermal growth factor-like protein 6
See related
Ensembl:ENSTMTG00000002516
Gene type
protein coding
RefSeq status
MODEL
Organism
Terrapene triunguis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Emydidae; Terrapene
Also known as
EGFL6
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Genomic context

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Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
102 current T_m_triunguis-2.0 (GCF_002925995.2) Unplaced Scaffold NW_020664373.1 (8360356..8423897)
100 previous assembly T_m_triunguis-1.0 (GCF_002925995.1) Unplaced Scaffold NW_019962572.1 (1200157..1267101, complement)

NW_020664373.1Genomic Context describing neighboring genes Neighboring gene toll-like receptor 8 Neighboring gene thymosin beta 4 X-linked Neighboring gene transcription elongation factor A N-terminal and central domain-containing protein Neighboring gene ras-related protein Rab-9A Neighboring gene trafficking protein particle complex subunit 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
epidermal growth factor-like protein 6
Names
EGF like domain multiple 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Terrapene carolina triunguis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference T_m_triunguis-2.0

Genomic

  1. NW_020664373.1 Reference T_m_triunguis-2.0

    Range
    8360356..8423897
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024215503.2 → XP_024071271.1  epidermal growth factor-like protein 6 isoform X1

    UniProtKB/TrEMBL
    A0A674I6E5
    Conserved Domains (5) summary
    cd06263
    Location:395 → 537
    MAM; Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members ...
    pfam07645
    Location:174 → 214
    EGF_CA; Calcium-binding EGF domain
    pfam12662
    Location:155 → 177
    cEGF; Complement Clr-like EGF-like
    pfam12947
    Location:223 → 258
    EGF_3; EGF domain
    cl00057
    Location:86 → 130
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

  2. XM_024215505.2 → XP_024071273.1  epidermal growth factor-like protein 6 isoform X3

    UniProtKB/TrEMBL
    A0A674I6E5
    Conserved Domains (4) summary
    cd06263
    Location:354 → 496
    MAM; Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members ...
    pfam07645
    Location:174 → 214
    EGF_CA; Calcium-binding EGF domain
    pfam12662
    Location:155 → 177
    cEGF; Complement Clr-like EGF-like
    cl00057
    Location:86 → 130
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

  3. XM_024215504.2 → XP_024071272.1  epidermal growth factor-like protein 6 isoform X2

    UniProtKB/TrEMBL
    A0A674I411
    Related
    ENSTMTP00000003399.1, ENSTMTT00000003526.1
    Conserved Domains (5) summary
    cd06263
    Location:382 → 524
    MAM; Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members ...
    pfam07645
    Location:161 → 201
    EGF_CA; Calcium-binding EGF domain
    pfam12662
    Location:142 → 164
    cEGF; Complement Clr-like EGF-like
    pfam12947
    Location:210 → 245
    EGF_3; EGF domain
    cl00057
    Location:73 → 117
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
Nucleotide Protein
Heading Accession and Version

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