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CUX1 cut like homeobox 1 [ Terrapene triunguis (Three-toed box turtle) ]

Gene ID: 112111971, updated on 19-May-2024

Summary

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Gene symbol
CUX1
Gene description
cut like homeobox 1
See related
Ensembl:ENSTMTG00000003577
Gene type
protein coding
RefSeq status
MODEL
Organism
Terrapene triunguis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Emydidae; Terrapene
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
33
Annotation release Status Assembly Chr Location
102 current T_m_triunguis-2.0 (GCF_002925995.2) Unplaced Scaffold NW_020664582.1 (2190294..2563343, complement)
100 previous assembly T_m_triunguis-1.0 (GCF_002925995.1) Unplaced Scaffold NW_019961079.1 (1670652..2062545, complement)

NW_020664582.1Genomic Context describing neighboring genes Neighboring gene PRKR interacting protein 1 Neighboring gene SH2B adaptor protein 2 Neighboring gene myosin light chain 10 Neighboring gene 3 beta-hydroxysteroid dehydrogenase type 7-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intra-Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
homeobox protein cut-like 1; protein CASP

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Terrapene carolina triunguis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference T_m_triunguis-2.0

Genomic

  1. NW_020664582.1 Reference T_m_triunguis-2.0

    Range
    2190294..2563343 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026656513.1 → XP_026512298.1  protein CASP isoform X2

    UniProtKB/TrEMBL
    A0A674I620
    Related
    ENSTMTP00000004811.1, ENSTMTT00000004966.1
    Conserved Domains (2) summary
    COG1196
    Location:118 → 375
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam08172
    Location:423 → 646
    CASP_C; CASP C terminal

  2. XM_026656512.1 → XP_026512297.1  homeobox protein cut-like 1 isoform X1

    Conserved Domains (5) summary
    PHA03247
    Location:843 → 938
    PHA03247; large tegument protein UL36; Provisional
    COG1196
    Location:117 → 375
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam00046
    Location:1252 → 1306
    Homeobox; Homeobox domain
    pfam02376
    Location:1128 → 1200
    CUT; CUT domain
    pfam04740
    Location:13 → 204
    LXG; LXG domain of WXG superfamily
Nucleotide Protein
Heading Accession and Version

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