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NBN nibrin [ Terrapene triunguis (Three-toed box turtle) ]

Gene ID: 112107992, updated on 19-May-2024

Summary

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Gene symbol
NBN
Gene description
nibrin
Gene type
protein coding
RefSeq status
MODEL
Organism
Terrapene triunguis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Emydidae; Terrapene
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
14
Annotation release Status Assembly Chr Location
102 current T_m_triunguis-2.0 (GCF_002925995.2) Unplaced Scaffold NW_020664409.1 (70128550..70200996, complement)
100 previous assembly T_m_triunguis-1.0 (GCF_002925995.1) Unplaced Scaffold NW_019960154.1 (90..43079)

NW_020664409.1Genomic Context describing neighboring genes Neighboring gene Y+L amino acid transporter 2 Neighboring gene oxidative stress induced growth inhibitor family member 2 Neighboring gene 2,4-dienoyl-CoA reductase 1 Neighboring gene calbindin 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables damaged DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA duplex unwinding IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in double-strand break repair via homologous recombination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mitotic G2 DNA damage checkpoint signaling IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Mre11 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nibrin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Terrapene carolina triunguis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference T_m_triunguis-2.0

Genomic

  1. NW_020664409.1 Reference T_m_triunguis-2.0

    Range
    70128550..70200996 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029913360.1 → XP_029769220.1  nibrin

    UniProtKB/TrEMBL
    A0A674IM51
    Conserved Domains (3) summary
    cd00060
    Location:84 → 127
    FHA; Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins ...
    cd17741
    Location:129 → 202
    BRCT_nibrin; BRCT domain of nibrin and similar proteins
    pfam08599
    Location:635 → 696
    Nbs1_C; DNA damage repair protein Nbs1
Nucleotide Protein
Heading Accession and Version

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