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rrh retinal pigment epithelium-derived rhodopsin homolog [ Salvelinus sp. IW2-2015 ]

Gene ID: 111963041, updated on 13-Aug-2024

Summary

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Gene symbol
rrh
Gene description
retinal pigment epithelium-derived rhodopsin homolog
Gene type
protein coding
RefSeq status
MODEL
Organism
Salvelinus sp. IW2-2015
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salvelinus
Orthologs
human zebrafish all
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Genomic context

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See rrh in Genome Data Viewer
Location:
chromosome: LG4q.2
Exon count:
7
Annotation release Status Assembly LG Location
101 current ASM291031v2 (GCF_002910315.2) LG4q.2 NC_036843.1 (14463737..14468889, complement)

Linkage Group LG4q.2 - NC_036843.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein FAM241A Neighboring gene leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein 3 Neighboring gene glutamyl aminopeptidase Neighboring gene uncharacterized LOC111962984 Neighboring gene glucosamine-6-phosphate isomerase 2-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_036843.1 Chromosome LG4q.2 Reference ASM291031v2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables G protein-coupled receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in G protein-coupled receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in visual perception IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in photoreceptor outer segment IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
visual pigment-like receptor peropsin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salvelinus alpinus Annotation Release 101

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM291031v2 Primary Assembly

Genomic

  1. NC_036843.1 Reference ASM291031v2 Primary Assembly

    Range
    14463737..14468889 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023986262.1 → XP_023842030.1  visual pigment-like receptor peropsin isoform X1

    Conserved Domains (1) summary
    cd15073
    Location:26 → 310
    7tmA_Peropsin; retinal pigment epithelium-derived rhodopsin homolog, member of the class A family of seven-transmembrane G protein-coupled receptors

  2. XM_023986263.1 → XP_023842031.1  visual pigment-like receptor peropsin isoform X2

    Conserved Domains (1) summary
    cd15073
    Location:26 → 305
    7tmA_Peropsin; retinal pigment epithelium-derived rhodopsin homolog, member of the class A family of seven-transmembrane G protein-coupled receptors
Nucleotide Protein
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