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KDM6A lysine demethylase 6A [ Cyanistes caeruleus (blue tit) ]

Gene ID: 111927175, updated on 3-Aug-2024

Summary

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Gene symbol
KDM6A
Gene description
lysine demethylase 6A
See related
Ensembl:ENSCCEG00000015684
Gene type
protein coding
RefSeq status
MODEL
Organism
Cyanistes caeruleus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Paridae; Cyanistes
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
28
Annotation release Status Assembly Chr Location
100 current cyaCae2 (GCF_002901205.1) 1 Unlocalized Scaffold NW_019776191.1 (3122611..3238424)

NW_019776191.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111927685 Neighboring gene FUN14 domain containing 1 Neighboring gene divergent protein kinase domain 2B Neighboring gene uncharacterized LOC111927207

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019776191 Chromosome 1 Unlocalized Scaffold Reference cyaCae2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables chromatin DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone H3K27me2/H3K27me3 demethylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heart development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of MLL3/4 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lysine-specific demethylase 6A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cyanistes caeruleus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference cyaCae2

Genomic

  1. NW_019776191.1 Reference cyaCae2

    Range
    3122611..3238424
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023923982.1 → XP_023779750.1  lysine-specific demethylase 6A isoform X1

    UniProtKB/TrEMBL
    A0A8C0V467
    Conserved Domains (6) summary
    pfam02373
    Location:1010 → 1118
    JmjC; JmjC domain, hydroxylase
    smart00558
    Location:976 → 1040
    JmjC; A domain family that is part of the cupin metalloenzyme superfamily
    COG0457
    Location:7 → 203
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:110 → 137
    TPR; TPR repeat [structural motif]
    cl25495
    Location:570 → 768
    Endomucin
    cl25496
    Location:405 → 648
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)

  2. XM_023923992.1 → XP_023779760.1  lysine-specific demethylase 6A isoform X2

    UniProtKB/TrEMBL
    A0A8C0VAX3
    Related
    ENSCCEP00000018717.1, ENSCCET00000028578.1
    Conserved Domains (6) summary
    pfam02373
    Location:1010 → 1118
    JmjC; JmjC domain, hydroxylase
    smart00558
    Location:976 → 1040
    JmjC; A domain family that is part of the cupin metalloenzyme superfamily
    COG0457
    Location:7 → 203
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:110 → 137
    TPR; TPR repeat [structural motif]
    cl25495
    Location:570 → 768
    Endomucin
    cl25496
    Location:405 → 648
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)

  3. XM_023924005.1 → XP_023779773.1  lysine-specific demethylase 6A isoform X4

    UniProtKB/TrEMBL
    A0A8C0V0W6
    Related
    ENSCCEP00000017363.1, ENSCCET00000026759.1
    Conserved Domains (6) summary
    pfam02373
    Location:958 → 1066
    JmjC; JmjC domain, hydroxylase
    smart00558
    Location:924 → 988
    JmjC; A domain family that is part of the cupin metalloenzyme superfamily
    COG0457
    Location:7 → 203
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:110 → 137
    TPR; TPR repeat [structural motif]
    cl25495
    Location:518 → 716
    Endomucin
    cl25496
    Location:353 → 596
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)

  4. XM_023923999.1 → XP_023779767.1  lysine-specific demethylase 6A isoform X3

    UniProtKB/TrEMBL
    A0A8C0V4B8
    Related
    ENSCCEP00000018691.1, ENSCCET00000028546.1
    Conserved Domains (6) summary
    pfam02373
    Location:965 → 1073
    JmjC; JmjC domain, hydroxylase
    smart00558
    Location:931 → 995
    JmjC; A domain family that is part of the cupin metalloenzyme superfamily
    COG0457
    Location:7 → 226
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:110 → 137
    TPR; TPR repeat [structural motif]
    cl25495
    Location:525 → 723
    Endomucin
    cl25496
    Location:206 → 603
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)

  5. XM_023924015.1 → XP_023779783.1  lysine-specific demethylase 6A isoform X5

    UniProtKB/TrEMBL
    A0A8C0V9U4
    Related
    ENSCCEP00000018694.1, ENSCCET00000028549.1
    Conserved Domains (6) summary
    pfam02373
    Location:913 → 1021
    JmjC; JmjC domain, hydroxylase
    smart00558
    Location:879 → 943
    JmjC; A domain family that is part of the cupin metalloenzyme superfamily
    COG0457
    Location:7 → 203
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:110 → 137
    TPR; TPR repeat [structural motif]
    cl25495
    Location:473 → 671
    Endomucin
    cl25496
    Location:308 → 551
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
Nucleotide Protein
Heading Accession and Version

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