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plcb1l phospholipase C beta 1-like [ Seriola lalandi dorsalis ]

Gene ID: 111672675, updated on 15-Mar-2024

Summary

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Gene symbol
plcb1l
Gene description
phospholipase C beta 1-like
See related
Ensembl:ENSSLDG00000002026
Gene type
protein coding
RefSeq status
MODEL
Organism
Seriola lalandi dorsalis (sub-species: dorsalis)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangiformes; Carangidae; Seriola
Also known as
plcb1
Orthologs
zebrafish all
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Genomic context

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See plcb1l in Genome Data Viewer
Location:
chromosome: Un
Exon count:
35
Annotation release Status Assembly Chr Location
100 current Sedor1 (GCF_002814215.1) Unplaced Scaffold NW_019525453.1 (2700505..2805827, complement)

NW_019525453.1Genomic Context describing neighboring genes Neighboring gene ankycorbin-like Neighboring gene phospholipase C beta 4 Neighboring gene bone morphogenetic protein 2b Neighboring gene FERM domain containing kindlin 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019525453 Unplaced Scaffold Reference Sedor1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calmodulin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphatidylinositol phospholipase C activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in lipid catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in memory IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phosphatidylinositol-mediated signaling IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nuclear speck IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-1
Names
phospholipase C beta 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Seriola lalandi dorsalis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sedor1 Primary Assembly

Genomic

  1. NW_019525453.1 Reference Sedor1 Primary Assembly

    Range
    2700505..2805827 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023430183.1 → XP_023285951.1  1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-1 isoform X1

    UniProtKB/TrEMBL
    A0A3B4WJD9
    Conserved Domains (6) summary
    cd00275
    Location:707 → 826
    C2_PLC_like; C2 domain present in Phosphoinositide-specific phospholipases C (PLC)
    cd08591
    Location:316 → 673
    PI-PLCc_beta; Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta
    cd13361
    Location:22 → 149
    PH_PLC_beta; Phospholipase C-beta (PLC-beta) pleckstrin homology (PH) domain
    pfam08703
    Location:1053 → 1205
    PLC-beta_C; PLC-beta C terminal
    cd16208
    Location:154 → 304
    EFh_PI-PLCbeta1; EF-hand motif found in phosphoinositide phospholipase C beta 1 (PI-PLC-beta1)
    cl25732
    Location:928 → 1156
    SMC_N; RecF/RecN/SMC N terminal domain

  2. XM_023430185.1 → XP_023285953.1  1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-1 isoform X3

    UniProtKB/TrEMBL
    A0A3B4WJD9
    Related
    ENSSLDP00000002602.1, ENSSLDT00000002711.1
    Conserved Domains (6) summary
    cd00275
    Location:609 → 728
    C2_PLC_like; C2 domain present in Phosphoinositide-specific phospholipases C (PLC)
    cd08591
    Location:218 → 575
    PI-PLCc_beta; Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta
    pfam08703
    Location:955 → 1107
    PLC-beta_C; PLC-beta C terminal
    cd16208
    Location:56 → 206
    EFh_PI-PLCbeta1; EF-hand motif found in phosphoinositide phospholipase C beta 1 (PI-PLC-beta1)
    cl17171
    Location:1 → 51
    PH-like; Pleckstrin homology-like domain
    cl25732
    Location:830 → 1058
    SMC_N; RecF/RecN/SMC N terminal domain

  3. XM_023430184.1 → XP_023285952.1  1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-1 isoform X2

    UniProtKB/TrEMBL
    A0A3B4WJD9
    Conserved Domains (6) summary
    cd00275
    Location:707 → 826
    C2_PLC_like; C2 domain present in Phosphoinositide-specific phospholipases C (PLC)
    cd08591
    Location:316 → 673
    PI-PLCc_beta; Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta
    cd13361
    Location:22 → 149
    PH_PLC_beta; Phospholipase C-beta (PLC-beta) pleckstrin homology (PH) domain
    pfam08703
    Location:1053 → 1170
    PLC-beta_C; PLC-beta C terminal
    cd16208
    Location:154 → 304
    EFh_PI-PLCbeta1; EF-hand motif found in phosphoinositide phospholipase C beta 1 (PI-PLC-beta1)
    cl25732
    Location:928 → 1156
    SMC_N; RecF/RecN/SMC N terminal domain

  4. XM_023430186.1 → XP_023285954.1  1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-1 isoform X4

    Conserved Domains (5) summary
    cd00275
    Location:707 → 826
    C2_PLC_like; C2 domain present in Phosphoinositide-specific phospholipases C (PLC)
    cd08591
    Location:316 → 673
    PI-PLCc_beta; Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta
    cd13361
    Location:22 → 149
    PH_PLC_beta; Phospholipase C-beta (PLC-beta) pleckstrin homology (PH) domain
    pfam06631
    Location:936 → 983
    DUF1154; Protein of unknown function (DUF1154)
    cd16208
    Location:154 → 304
    EFh_PI-PLCbeta1; EF-hand motif found in phosphoinositide phospholipase C beta 1 (PI-PLC-beta1)
Nucleotide Protein
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