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mbd4 methyl-CpG binding domain protein 4 [ Seriola lalandi dorsalis ]

Gene ID: 111672189, updated on 15-Mar-2024

Summary

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Gene symbol
mbd4
Gene description
methyl-CpG binding domain protein 4
Gene type
protein coding
RefSeq status
MODEL
Organism
Seriola lalandi dorsalis (sub-species: dorsalis)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangiformes; Carangidae; Seriola
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
100 current Sedor1 (GCF_002814215.1) Unplaced Scaffold NW_019525448.1 (29658..33375)

NW_019525448.1Genomic Context describing neighboring genes Neighboring gene rhodopsin-like Neighboring gene intraflagellar transport 122 homolog (Chlamydomonas) Neighboring gene uncharacterized LOC111672182 Neighboring gene cysteine rich with EGF like domains 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019525448 Unplaced Scaffold Reference Sedor1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pyrimidine-specific mismatch base pair DNA N-glycosylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
methyl-CpG-binding domain protein 4
Names
methyl-CpG binding domain 4, DNA glycosylase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Seriola lalandi dorsalis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sedor1 Primary Assembly

Genomic

  1. NW_019525448.1 Reference Sedor1 Primary Assembly

    Range
    29658..33375
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023429523.1 → XP_023285291.1  methyl-CpG-binding domain protein 4

    UniProtKB/TrEMBL
    A0A3B4XA19
    Conserved Domains (2) summary
    cd01396
    Location:33 → 94
    MeCP2_MBD; MeCP2, MBD1, MBD2, MBD3, and MBD4 are members of a protein family that share the methyl-CpG-binding domain (MBD). The MBD, consists of about 70 residues and is defined as the minimal region required for binding to methylated DNA by a methyl-CpG-binding ...
    cl27658
    Location:338 → 403
    HHH; Helix-hairpin-helix motif
Nucleotide Protein
Heading Accession and Version

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