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sfmbt1 Scm like with four mbt domains 1 [ Seriola lalandi dorsalis ]

Gene ID: 111671002, updated on 15-Mar-2024

Summary

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Gene symbol
sfmbt1
Gene description
Scm like with four mbt domains 1
See related
Ensembl:ENSSLDG00000012738
Gene type
protein coding
RefSeq status
MODEL
Organism
Seriola lalandi dorsalis (sub-species: dorsalis)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangiformes; Carangidae; Seriola
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
21
Annotation release Status Assembly Chr Location
100 current Sedor1 (GCF_002814215.1) Unplaced Scaffold NW_019525417.1 (709145..726286, complement)

NW_019525417.1Genomic Context describing neighboring genes Neighboring gene STIM activating enhance Neighboring gene transfer RNA glutamic acid (anticodon CUC) Neighboring gene transfer RNA glutamic acid (anticodon CUC) Neighboring gene protein kinase C, delta b Neighboring gene transfer RNA glutamic acid (anticodon CUC) Neighboring gene FYVE, RhoGEF and PH domain containing 5a

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019525417 Unplaced Scaffold Reference Sedor1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables histone binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription corepressor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
scm-like with four MBT domains protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Seriola lalandi dorsalis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sedor1 Primary Assembly

Genomic

  1. NW_019525417.1 Reference Sedor1 Primary Assembly

    Range
    709145..726286 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023428017.1 → XP_023283785.1  scm-like with four MBT domains protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A3B4XE70
    Related
    ENSSLDP00000016119.1, ENSSLDT00000016714.1
    Conserved Domains (4) summary
    cd09581
    Location:781 → 864
    SAM_Scm-like-4MBT1,2; SAM domain of Scm-like-4MBT1,2 proteins of Polycomb group
    smart00561
    Location:366 → 459
    MBT; Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2
    pfam02820
    Location:168 → 234
    MBT; mbt repeat
    pfam12140
    Location:508 → 623
    SLED; SLED domain

  2. XM_023428016.1 → XP_023283784.1  scm-like with four MBT domains protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A3B4XE70, A0A3B4XK21
    Related
    ENSSLDP00000016080.1, ENSSLDT00000016675.1
    Conserved Domains (4) summary
    cd09581
    Location:782 → 865
    SAM_Scm-like-4MBT1,2; SAM domain of Scm-like-4MBT1,2 proteins of Polycomb group
    smart00561
    Location:366 → 459
    MBT; Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2
    pfam02820
    Location:168 → 234
    MBT; mbt repeat
    pfam12140
    Location:509 → 624
    SLED; SLED domain
Nucleotide Protein
Heading Accession and Version

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