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sema3c sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C [ Seriola lalandi dorsalis ]

Gene ID: 111660013, updated on 15-Mar-2024

Summary

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Gene symbol
sema3c
Gene description
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C
See related
Ensembl:ENSSLDG00000018375
Gene type
protein coding
RefSeq status
MODEL
Organism
Seriola lalandi dorsalis (sub-species: dorsalis)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangiformes; Carangidae; Seriola
Orthologs
human zebrafish all
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Genomic context

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See sema3c in Genome Data Viewer
Location:
chromosome: Un
Exon count:
19
Annotation release Status Assembly Chr Location
100 current Sedor1 (GCF_002814215.1) Unplaced Scaffold NW_019525057.1 (611936..658643, complement)

NW_019525057.1Genomic Context describing neighboring genes Neighboring gene guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 1 Neighboring gene CD36 molecule (CD36 blood group) Neighboring gene family with sequence similarity 180 member A Neighboring gene dead end protein 1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019525057 Unplaced Scaffold Reference Sedor1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chemorepellent activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables semaphorin receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative chemotaxis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of axon extension involved in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neural crest cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in semaphorin-plexin signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
semaphorin-3C
Names
semaphorin 3C

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Seriola lalandi dorsalis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sedor1 Primary Assembly

Genomic

  1. NW_019525057.1 Reference Sedor1 Primary Assembly

    Range
    611936..658643 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023413120.1 → XP_023268888.1  semaphorin-3C

    UniProtKB/TrEMBL
    A0A3B4Y2N1
    Related
    ENSSLDP00000023567.1, ENSSLDT00000024326.1
    Conserved Domains (3) summary
    cd05871
    Location:586 → 675
    Ig_Semaphorin_classIII; Immunoglobulin (Ig)-like domain of class III semaphorin
    cd11251
    Location:56 → 525
    Sema_3C; The Sema domain, a protein interacting module, of semaphorin 3C (Sema3C)
    smart00423
    Location:524 → 569
    PSI; domain found in Plexins, Semaphorins and Integrins

  2. XM_023413119.1 → XP_023268887.1  semaphorin-3C

    UniProtKB/TrEMBL
    A0A3B4Y2N1
    Conserved Domains (3) summary
    cd05871
    Location:586 → 675
    Ig_Semaphorin_classIII; Immunoglobulin (Ig)-like domain of class III semaphorin
    cd11251
    Location:56 → 525
    Sema_3C; The Sema domain, a protein interacting module, of semaphorin 3C (Sema3C)
    smart00423
    Location:524 → 569
    PSI; domain found in Plexins, Semaphorins and Integrins
Nucleotide Protein
Heading Accession and Version

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