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depdc1b DEP domain containing 1B [ Seriola lalandi dorsalis ]

Gene ID: 111658144, updated on 15-Mar-2024

Summary

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Gene symbol
depdc1b
Gene description
DEP domain containing 1B
See related
Ensembl:ENSSLDG00000012747
Gene type
protein coding
RefSeq status
MODEL
Organism
Seriola lalandi dorsalis (sub-species: dorsalis)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangiformes; Carangidae; Seriola
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
100 current Sedor1 (GCF_002814215.1) Unplaced Scaffold NW_019524978.1 (2462480..2474451)

NW_019524978.1Genomic Context describing neighboring genes Neighboring gene nuclear factor of activated T cells 1 Neighboring gene spalt-like transcription factor 3a Neighboring gene galanin receptor 1 Neighboring gene myelin basic protein-like Neighboring gene myelin basic protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019524978 Unplaced Scaffold Reference Sedor1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in intracellular signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DEP domain-containing protein 1B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Seriola lalandi dorsalis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sedor1 Primary Assembly

Genomic

  1. NW_019524978.1 Reference Sedor1 Primary Assembly

    Range
    2462480..2474451
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023410562.1 → XP_023266330.1  DEP domain-containing protein 1B

    UniProtKB/TrEMBL
    A0A3B4XJY7
    Related
    ENSSLDP00000016050.1, ENSSLDT00000016646.1
    Conserved Domains (2) summary
    cd04405
    Location:180 → 403
    RhoGAP_BRCC3-like; RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of BRCC3-like proteins. This subgroup also contains two groups of closely related proteins, BRCC3 and DEPDC7, which both contain a C-terminal RhoGAP-like domain and an N-terminal ...
    cl02442
    Location:15 → 106
    DEP; DEP domain, named after Dishevelled, Egl-10, and Pleckstrin, where this domain was first discovered. The function of this domain is still not clear, but it is believed to be important for the membrane association of the signaling proteins in which it is ...
Nucleotide Protein
Heading Accession and Version

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