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zcchc4 zinc finger, CCHC domain containing 4 [ Amphiprion ocellaris (clown anemonefish) ]

Gene ID: 111584569, updated on 18-Jun-2024

Summary

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Gene symbol
zcchc4
Gene description
zinc finger, CCHC domain containing 4
See related
Ensembl:ENSAOCG00000005536
Gene type
protein coding
RefSeq status
MODEL
Organism
Amphiprion ocellaris
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Pomacentridae; Amphiprion
Orthologs
human zebrafish all
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Genomic context

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See zcchc4 in Genome Data Viewer
Location:
chromosome: 23
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2023_03 current ASM2253959v1 (GCF_022539595.1) 23 NC_072788.1 (2913560..2931983, complement)
101 previous assembly AmpOce1.0 (GCF_002776465.1) Unplaced Scaffold NW_019374114.1 (21901..38254)

Chromosome 23 - NC_072788.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC129348110 Neighboring gene MAD2 mitotic arrest deficient-like 1 (yeast) Neighboring gene phosphodiesterase 5A, cGMP-specific, b Neighboring gene nuclear factor 7, ovary Neighboring gene actin binding LIM protein family, member 2 Neighboring gene actin filament associated protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables rRNA (adenine-N6-)-methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in rRNA methylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
rRNA N6-adenosine-methyltransferase ZCCHC4
Names
zinc finger CCHC-type containing 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_022539595.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2253959v1 Primary Assembly

Genomic

  1. NC_072788.1 Reference ASM2253959v1 Primary Assembly

    Range
    2913560..2931983 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023293728.3 → XP_023149496.2  rRNA N6-adenosine-methyltransferase ZCCHC4

    UniProtKB/TrEMBL
    A0A3Q1AMF1

  2. XM_023293727.3 → XP_023149495.2  rRNA N6-adenosine-methyltransferase ZCCHC4

    UniProtKB/TrEMBL
    A0A3Q1AMF1
    Related
    ENSAOCP00000002412.2, ENSAOCT00000011535.2
Nucleotide Protein
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