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sft2d1 SFT2 domain containing 1 [ Amphiprion ocellaris (clown anemonefish) ]

Gene ID: 111576100, updated on 18-Jun-2024

Summary

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Gene symbol
sft2d1
Gene description
SFT2 domain containing 1
See related
Ensembl:ENSAOCG00000003697
Gene type
protein coding
RefSeq status
MODEL
Organism
Amphiprion ocellaris
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Pomacentridae; Amphiprion
Orthologs
human zebrafish all
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Genomic context

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See sft2d1 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2023_03 current ASM2253959v1 (GCF_022539595.1) 16 NC_072781.1 (15047496..15059300)
101 previous assembly AmpOce1.0 (GCF_002776465.1) Unplaced Scaffold NW_019372952.1 (90694..102558)

Chromosome 16 - NC_072781.1Genomic Context describing neighboring genes Neighboring gene c-mer proto-oncogene tyrosine kinase a Neighboring gene luteinizing hormone/choriogonadotropin receptor Neighboring gene proline rich 18 Neighboring gene T-box transcription factor Tb

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
vesicle transport protein SFT2A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_022539595.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2253959v1 Primary Assembly

Genomic

  1. NC_072781.1 Reference ASM2253959v1 Primary Assembly

    Range
    15047496..15059300
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035953519.2 → XP_035809412.1  vesicle transport protein SFT2A isoform X2

    Conserved Domains (1) summary
    pfam04178
    Location:46 → 141
    Got1; Got1/Sft2-like family

  2. XM_023281625.3 → XP_023137393.1  vesicle transport protein SFT2A isoform X1

    UniProtKB/TrEMBL
    A0A3Q1AID2
    Related
    ENSAOCP00000070720.1, ENSAOCT00000051286.1
    Conserved Domains (1) summary
    pfam04178
    Location:46 → 155
    Got1; Got1/Sft2-like family
Nucleotide Protein
Heading Accession and Version

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