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cd44b CD44 molecule (IN blood group) b [ Amphiprion ocellaris (clown anemonefish) ]

Gene ID: 111563946, updated on 18-Jun-2024

Summary

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Gene symbol
cd44b
Gene description
CD44 molecule (IN blood group) b
See related
Ensembl:ENSAOCG00000021751
Gene type
protein coding
RefSeq status
MODEL
Organism
Amphiprion ocellaris
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Pomacentridae; Amphiprion
Also known as
cd44
Orthologs
zebrafish all
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Genomic context

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See cd44b in Genome Data Viewer
Location:
chromosome: 3
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2023_03 current ASM2253959v1 (GCF_022539595.1) 3 NC_072768.1 (5924243..5949072)
101 previous assembly AmpOce1.0 (GCF_002776465.1) Unplaced Scaffold NW_019376117.1 (224568..242488, complement)

Chromosome 3 - NC_072768.1Genomic Context describing neighboring genes Neighboring gene pyruvate dehydrogenase complex component X Neighboring gene uncharacterized LOC129348137 Neighboring gene uncharacterized LOC129348592 Neighboring gene solute carrier family 1 member 2b Neighboring gene peptidase domain containing associated with muscle regeneration 1b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cytokine receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hyaluronic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in inflammatory response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of ERK1 and ERK2 cascade IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in basolateral plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of macrophage migration inhibitory factor receptor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
brevican core protein
Names
CD44 molecule (Indian blood group) b

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_022539595.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2253959v1 Primary Assembly

Genomic

  1. NC_072768.1 Reference ASM2253959v1 Primary Assembly

    Range
    5924243..5949072
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023263230.3 → XP_023118998.2  brevican core protein

    UniProtKB/TrEMBL
    A0A3Q1BR00, A0A3Q1CXQ9
    Related
    ENSAOCP00000030648.2, ENSAOCT00000032436.2
Nucleotide Protein
Heading Accession and Version

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