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LTBR lymphotoxin beta receptor [ Piliocolobus tephrosceles (Ugandan red Colobus) ]

Gene ID: 111555938, updated on 15-Mar-2024

Summary

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Gene symbol
LTBR
Gene description
lymphotoxin beta receptor
See related
Ensembl:ENSPTEG00000038691
Gene type
protein coding
RefSeq status
MODEL
Organism
Piliocolobus tephrosceles
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Colobinae; Piliocolobus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 10
Exon count:
10
Annotation release Status Assembly Chr Location
102 current ASM277652v3 (GCF_002776525.3) 10 NC_045443.1 (6747328..6760295)
100 previous assembly ASM277652v1 (GCF_002776525.1) Unplaced Scaffold NW_019317970.1 (1536891..1544808, complement)

Chromosome 10 - NC_045443.1Genomic Context describing neighboring genes Neighboring gene TNF receptor superfamily member 1A Neighboring gene uncharacterized LOC116418939 Neighboring gene sodium channel epithelial 1 subunit alpha Neighboring gene CD27 molecule Neighboring gene TAP binding protein like Neighboring gene vesicle associated membrane protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin protein ligase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in hematopoietic or lymphoid organ development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of canonical NF-kappaB signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tumor necrosis factor receptor superfamily member 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Piliocolobus tephrosceles Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM277652v3

Genomic

  1. NC_045443.1 Reference ASM277652v3

    Range
    6747328..6760295
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023232454.2 → XP_023088222.1  tumor necrosis factor receptor superfamily member 3 isoform X1

    UniProtKB/TrEMBL
    A0A8C9IYC3, A0A8C9M052
    Related
    ENSPTEP00000042406.1, ENSPTET00000056534.1
    Conserved Domains (3) summary
    cd00185
    Location:170 → 210
    TNFRSF; CRD2 [structural motif]
    cd10578
    Location:11 → 168
    TNFRSF3; Tumor necrosis factor receptor superfamily member 3 (TNFRSF3), also known as lymphotoxin beta receptor (LTBR)
    cl22855
    Location:148 → 210
    TNFRSF; Tumor necrosis factor receptor superfamily (TNFRSF)

  2. XM_023232455.2 → XP_023088223.1  tumor necrosis factor receptor superfamily member 3 isoform X2

    UniProtKB/TrEMBL
    A0A8C9IYC3
    Related
    ENSPTEP00000042408.1, ENSPTET00000056536.1
    Conserved Domains (3) summary
    cd00185
    Location:169 → 209
    TNFRSF; CRD2 [structural motif]
    cd10578
    Location:11 → 167
    TNFRSF3; Tumor necrosis factor receptor superfamily member 3 (TNFRSF3), also known as lymphotoxin beta receptor (LTBR)
    cl22855
    Location:147 → 209
    TNFRSF; Tumor necrosis factor receptor superfamily (TNFRSF)
Nucleotide Protein
Heading Accession and Version

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