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SHROOM3 shroom family member 3 [ Piliocolobus tephrosceles (Ugandan red Colobus) ]

Gene ID: 111549397, updated on 15-Mar-2024

Summary

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Gene symbol
SHROOM3
Gene description
shroom family member 3
See related
Ensembl:ENSPTEG00000024526
Gene type
protein coding
RefSeq status
MODEL
Organism
Piliocolobus tephrosceles
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Colobinae; Piliocolobus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 3
Exon count:
12
Annotation release Status Assembly Chr Location
102 current ASM277652v3 (GCF_002776525.3) 3 NC_045436.1 (112642520..112993538, complement)
100 previous assembly ASM277652v1 (GCF_002776525.1) Unplaced Scaffold NW_019317461.1 (8517885..8868897, complement)

Chromosome 3 - NC_045436.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC113225225 Neighboring gene sosondowah ankyrin repeat domain family member B Neighboring gene small nucleolar RNA SNORD50 Neighboring gene coiled-coil domain containing 158 Neighboring gene U6 spliceosomal RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin filament binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in actin filament organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in adherens junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in apical junction complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in apical plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cortical actin cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein Shroom3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Piliocolobus tephrosceles Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM277652v3

Genomic

  1. NC_045436.1 Reference ASM277652v3

    Range
    112642520..112993538 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023222578.2 → XP_023078346.1  protein Shroom3 isoform X1

    UniProtKB/TrEMBL
    A0A8C9HMT0
    Related
    ENSPTEP00000023914.1
    Conserved Domains (4) summary
    cd00992
    Location:33 → 107
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    pfam08687
    Location:1671 → 1955
    ASD2; Apx/Shroom domain ASD2
    pfam08688
    Location:884 → 1056
    ASD1; Apx/Shroom domain ASD1
    cl26464
    Location:959 → 1521
    Atrophin-1; Atrophin-1 family

  2. XM_023222579.1 → XP_023078347.1  protein Shroom3 isoform X2

    UniProtKB/TrEMBL
    A0A8C9HPA3
    Related
    ENSPTEP00000023909.1, ENSPTET00000034108.1
    Conserved Domains (3) summary
    pfam08687
    Location:1546 → 1830
    ASD2; Apx/Shroom domain ASD2
    pfam08688
    Location:759 → 931
    ASD1; Apx/Shroom domain ASD1
    cl26464
    Location:834 → 1396
    Atrophin-1; Atrophin-1 family
Nucleotide Protein
Heading Accession and Version

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