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LOC111542956 leukocyte surface antigen CD47 [ Piliocolobus tephrosceles (Ugandan red Colobus) ]

Gene ID: 111542956, updated on 9-Nov-2023

Summary

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Gene symbol
LOC111542956
Gene description
leukocyte surface antigen CD47
See related
Ensembl:ENSPTEG00000025783
Gene type
protein coding
RefSeq status
MODEL
Organism
Piliocolobus tephrosceles
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Colobinae; Piliocolobus
Also known as
CD47
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Genomic context

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Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
102 current ASM277652v3 (GCF_002776525.3) Unplaced Scaffold NW_022300975.1 (3084325..3129795)
100 previous assembly ASM277652v1 (GCF_002776525.1) Unplaced Scaffold NW_019316638.1 (9518815..9565272, complement)

NW_022300975.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC113225239 Neighboring gene uncharacterized LOC111542988 Neighboring gene uncharacterized LOC111541808 Neighboring gene HMG box transcription factor BBX

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables thrombospondin receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of inflammatory response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of phagocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular exosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
leukocyte surface antigen CD47
Names
CD47 molecule

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Piliocolobus tephrosceles Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM277652v3

Genomic

  1. NW_022300975.1 Reference ASM277652v3

    Range
    3084325..3129795
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023212605.2 → XP_023068373.1  leukocyte surface antigen CD47 isoform X1

    UniProtKB/TrEMBL
    A0A8C9HSQ0, A0A8C9HVH9
    Related
    ENSPTEP00000025501.1, ENSPTET00000036081.1
    Conserved Domains (2) summary
    cd16090
    Location:26 → 133
    IgV_CD47; Immunoglobulin variable domain (IgV) in CD47
    pfam04549
    Location:144 → 292
    CD47; CD47 transmembrane region

  2. XM_023212615.2 → XP_023068383.1  leukocyte surface antigen CD47 isoform X2

    UniProtKB/TrEMBL
    A0A8C9HVH9, A0A8C9HVJ9
    Conserved Domains (2) summary
    cd16090
    Location:26 → 133
    IgV_CD47; Immunoglobulin variable domain (IgV) in CD47
    pfam04549
    Location:144 → 292
    CD47; CD47 transmembrane region

  3. XM_023212624.2 → XP_023068392.1  leukocyte surface antigen CD47 isoform X3

    UniProtKB/TrEMBL
    A0A8C9HR86, A0A8C9HVH9
    Related
    ENSPTEP00000025499.1, ENSPTET00000036078.1
    Conserved Domains (2) summary
    cd16090
    Location:26 → 133
    IgV_CD47; Immunoglobulin variable domain (IgV) in CD47
    pfam04549
    Location:144 → 292
    CD47; CD47 transmembrane region

  4. XM_023212630.2 → XP_023068398.1  leukocyte surface antigen CD47 isoform X4

    UniProtKB/TrEMBL
    A0A8C9HVH9
    Conserved Domains (2) summary
    cd16090
    Location:26 → 133
    IgV_CD47; Immunoglobulin variable domain (IgV) in CD47
    pfam04549
    Location:144 → 292
    CD47; CD47 transmembrane region

  5. XM_023212638.3 → XP_023068406.1  leukocyte surface antigen CD47 isoform X5

    Conserved Domains (2) summary
    pfam04549
    Location:99 → 247
    CD47; CD47 transmembrane region
    cl11960
    Location:1 → 88
    Ig; Immunoglobulin domain

  6. XM_023212647.3 → XP_023068415.1  leukocyte surface antigen CD47 isoform X5

    Conserved Domains (2) summary
    pfam04549
    Location:99 → 247
    CD47; CD47 transmembrane region
    cl11960
    Location:1 → 88
    Ig; Immunoglobulin domain
Nucleotide Protein
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