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RARB retinoic acid receptor beta [ Piliocolobus tephrosceles (Ugandan red Colobus) ]

Gene ID: 111539463, updated on 15-Mar-2024

Summary

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Gene symbol
RARB
Gene description
retinoic acid receptor beta
See related
Ensembl:ENSPTEG00000033685
Gene type
protein coding
RefSeq status
MODEL
Organism
Piliocolobus tephrosceles
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Colobinae; Piliocolobus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 2
Exon count:
9
Annotation release Status Assembly Chr Location
102 current ASM277652v3 (GCF_002776525.3) 2 NC_045435.1 (142240007..142494994, complement)
100 previous assembly ASM277652v1 (GCF_002776525.1) Unplaced Scaffold NW_019317080.1 (4577356..4830916, complement)

Chromosome 2 - NC_045435.1Genomic Context describing neighboring genes Neighboring gene cysteine-rich protein 1 pseudogene Neighboring gene DNA topoisomerase II beta Neighboring gene U7 small nuclear RNA Neighboring gene cofilin-1 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nuclear glucocorticoid receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nuclear receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellular response to corticotropin-releasing hormone stimulus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in retinoic acid receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of transcription regulator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
retinoic acid receptor beta

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Piliocolobus tephrosceles Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM277652v3

Genomic

  1. NC_045435.1 Reference ASM277652v3

    Range
    142240007..142494994 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023207282.3 → XP_023063050.2  retinoic acid receptor beta isoform X2

    UniProtKB/TrEMBL
    A0A8C9IU05
    Related
    ENSPTEP00000035749.1
    Conserved Domains (2) summary
    cd06937
    Location:151 → 381
    NR_LBD_RAR; The ligand binding domain (LBD) of retinoic acid receptor (RAR), a members of the nuclear receptor superfamily
    cd06964
    Location:47 → 131
    NR_DBD_RAR; DNA-binding domain of retinoic acid receptor (RAR) is composed of two C4-type zinc fingers

  2. XM_023207281.3 → XP_023063049.1  retinoic acid receptor beta isoform X1

    UniProtKB/TrEMBL
    A0A8C9IJA4
    Related
    ENSPTEP00000035751.1
    Conserved Domains (2) summary
    cd06937
    Location:179 → 409
    NR_LBD_RAR; The ligand binding domain (LBD) of retinoic acid receptor (RAR), a members of the nuclear receptor superfamily
    cd06964
    Location:75 → 159
    NR_DBD_RAR; DNA-binding domain of retinoic acid receptor (RAR) is composed of two C4-type zinc fingers
Nucleotide Protein
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