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lama3 laminin subunit alpha 3 [ Seriola dumerili (greater amberjack) ]

Gene ID: 111238966, updated on 21-Dec-2023

Summary

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Gene symbol
lama3
Gene description
laminin subunit alpha 3
Gene type
protein coding
RefSeq status
MODEL
Organism
Seriola dumerili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangiformes; Carangidae; Seriola
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Genomic context

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Location:
chromosome: Un
Exon count:
77
Annotation release Status Assembly Chr Location
100 current Sdu_1.0 (GCF_002260705.1) Unplaced Scaffold NW_019176076.1 (57756..110428, complement)

NW_019176076.1Genomic Context describing neighboring genes Neighboring gene histamine receptor H3 Neighboring gene oxysterol-binding protein-related protein 1-like Neighboring gene tetratricopeptide repeat protein 39C-like Neighboring gene uncharacterized LOC111238967 Neighboring gene vacuolar protein sorting 4 homolog B Neighboring gene 3-ketodihydrosphingosine reductase

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019176076 Unplaced Scaffold Reference Sdu_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Whole Genome Sequencing of Greater Amberjack (Seriola dumerili) for SNP Identification on Aligned Scaffolds and Genome Structural Variation Analysis Using Parallel Resequencing. Araki K, et al. Int J Genomics, 2018. PMID 29785397, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables extracellular matrix structural constituent IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables signaling receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of embryonic development IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
laminin subunit alpha-3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Seriola dumerili Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sdu_1.0 Primary Assembly

Genomic

  1. NW_019176076.1 Reference Sdu_1.0 Primary Assembly

    Range
    57756..110428 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022768706.1 → XP_022624427.1  laminin subunit alpha-3

    Conserved Domains (11) summary
    smart00180
    Location:588 → 624
    EGF_Lam; Laminin-type epidermal growth factor-like domai
    smart00282
    Location:3075 → 3206
    LamG; Laminin G domain
    cd00055
    Location:1487 → 1537
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd00110
    Location:3229 → 3389
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam00053
    Location:1349 → 1397
    Laminin_EGF; Laminin EGF domain
    pfam06009
    Location:2373 → 2501
    Laminin_II; Laminin Domain II
    pfam00052
    Location:1601 → 1736
    Laminin_B; Laminin B (Domain IV)
    pfam00055
    Location:51 → 289
    Laminin_N; Laminin N-terminal (Domain VI)
    pfam06008
    Location:1935 → 2177
    Laminin_I; Laminin Domain I
    cl22861
    Location:2475 → 2655
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    cl25732
    Location:2108 → 2402
    SMC_N; RecF/RecN/SMC N terminal domain
Nucleotide Protein
Heading Accession and Version

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