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pus1 pseudouridine synthase 1 [ Seriola dumerili (greater amberjack) ]

Gene ID: 111238953, updated on 15-Mar-2024

Summary

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Gene symbol
pus1
Gene description
pseudouridine synthase 1
See related
Ensembl:ENSSDUG00000007102
Gene type
protein coding
RefSeq status
MODEL
Organism
Seriola dumerili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangiformes; Carangidae; Seriola
Orthologs
human zebrafish all
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Genomic context

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See pus1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
100 current Sdu_1.0 (GCF_002260705.1) Unplaced Scaffold NW_019176070.1 (427737..430312)

NW_019176070.1Genomic Context describing neighboring genes Neighboring gene BCR activator of RhoGEF and GTPase Neighboring gene ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2b Neighboring gene nucleolar complex associated 4 homolog Neighboring gene RIMS binding protein 2a

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019176070 Unplaced Scaffold Reference Sdu_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Whole Genome Sequencing of Greater Amberjack (Seriola dumerili) for SNP Identification on Aligned Scaffolds and Genome Structural Variation Analysis Using Parallel Resequencing. Araki K, et al. Int J Genomics, 2018. PMID 29785397, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pseudouridine synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA pseudouridine synthesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in tRNA pseudouridine synthesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tRNA pseudouridine synthase A, mitochondrial
Names
pseudouridylate synthase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Seriola dumerili Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sdu_1.0 Primary Assembly

Genomic

  1. NW_019176070.1 Reference Sdu_1.0 Primary Assembly

    Range
    427737..430312
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022768690.1 → XP_022624411.1  tRNA pseudouridine synthase A, mitochondrial

    UniProtKB/TrEMBL
    A0A3B4TV95
    Related
    ENSSDUP00000009660.1, ENSSDUT00000009848.1
    Conserved Domains (1) summary
    cd02568
    Location:84 → 337
    PseudoU_synth_PUS1_PUS2; Pseudouridine synthase, PUS1/ PUS2 like
Nucleotide Protein
Heading Accession and Version

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