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stim2b stromal interaction molecule 2b [ Seriola dumerili (greater amberjack) ]

Gene ID: 111233014, updated on 15-Mar-2024

Summary

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Gene symbol
stim2b
Gene description
stromal interaction molecule 2b
See related
Ensembl:ENSSDUG00000021614
Gene type
protein coding
RefSeq status
MODEL
Organism
Seriola dumerili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangiformes; Carangidae; Seriola
Also known as
stim2
Annotation information
Annotation category: partial on reference assembly
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
100 current Sdu_1.0 (GCF_002260705.1) Unplaced Scaffold NW_019174617.1 (2071566..2090256, complement)

NW_019174617.1Genomic Context describing neighboring genes Neighboring gene ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 Neighboring gene protocadherin 7b

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019174617 Unplaced Scaffold Reference Sdu_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Whole Genome Sequencing of Greater Amberjack (Seriola dumerili) for SNP Identification on Aligned Scaffolds and Genome Structural Variation Analysis Using Parallel Resequencing. Araki K, et al. Int J Genomics, 2018. PMID 29785397, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium channel regulator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in activation of store-operated calcium channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular calcium ion homeostasis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in store-operated calcium entry IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
stromal interaction molecule 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Seriola dumerili Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sdu_1.0 Primary Assembly

Genomic

  1. NW_019174617.1 Reference Sdu_1.0 Primary Assembly

    Range
    2071566..2090256 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022760739.1 → XP_022616460.1  stromal interaction molecule 2

    UniProtKB/TrEMBL
    A0A3B4VHF1
    Related
    ENSSDUP00000030039.1, ENSSDUT00000030554.1
    Conserved Domains (3) summary
    pfam16533
    Location:300 → 397
    SOAR; STIM1 Orai1-activating region
    cl15755
    Location:86 → 159
    SAM_superfamily; SAM (Sterile alpha motif )
    cl27055
    Location:204 → 321
    MutS_III; MutS domain III
Nucleotide Protein
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