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tep1 telomerase-associated protein 1 [ Seriola dumerili (greater amberjack) ]

Gene ID: 111231036, updated on 15-Mar-2024

Summary

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Gene symbol
tep1
Gene description
telomerase-associated protein 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Seriola dumerili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangiformes; Carangidae; Seriola
Orthologs
human zebrafish all
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Genomic context

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See tep1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
55
Annotation release Status Assembly Chr Location
100 current Sdu_1.0 (GCF_002260705.1) Unplaced Scaffold NW_019174546.1 (338586..369515)

NW_019174546.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111231189 Neighboring gene uncharacterized LOC111231279 Neighboring gene uncharacterized LOC111230951 Neighboring gene apolipoprotein L, 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019174546 Unplaced Scaffold Reference Sdu_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Whole Genome Sequencing of Greater Amberjack (Seriola dumerili) for SNP Identification on Aligned Scaffolds and Genome Structural Variation Analysis Using Parallel Resequencing. Araki K, et al. Int J Genomics, 2018. PMID 29785397, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables telomerase RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables telomerase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in telomere maintenance via recombination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of telomerase holoenzyme complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: telomerase protein component 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Seriola dumerili Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sdu_1.0 Primary Assembly

Genomic

  1. NW_019174546.1 Reference Sdu_1.0 Primary Assembly

    Range
    338586..369515
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022757990.1 → XP_022613711.1  LOW QUALITY PROTEIN: telomerase protein component 1

    Conserved Domains (6) summary
    COG2319
    Location:1676 → 2148
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:2067 → 2351
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:1704 → 1740
    7WD40; WD40 repeat [structural motif]
    pfam05731
    Location:226 → 663
    TROVE; TROVE domain
    pfam13191
    Location:1159 → 1292
    AAA_16; AAA ATPase domain
    pfam13271
    Location:933 → 1031
    DUF4062; Domain of unknown function (DUF4062)
Nucleotide Protein
Heading Accession and Version

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