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rnf139 ring finger protein 139 [ Seriola dumerili (greater amberjack) ]

Gene ID: 111230671, updated on 15-Mar-2024

Summary

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Gene symbol
rnf139
Gene description
ring finger protein 139
See related
Ensembl:ENSSDUG00000013943
Gene type
protein coding
RefSeq status
MODEL
Organism
Seriola dumerili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangiformes; Carangidae; Seriola
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
100 current Sdu_1.0 (GCF_002260705.1) Unplaced Scaffold NW_019174531.1 (1509643..1517345, complement)

NW_019174531.1Genomic Context describing neighboring genes Neighboring gene MTSS I-BAR domain containing 1 Neighboring gene transmembrane protein 65 Neighboring gene TatD DNase domain containing 1 Neighboring gene NADH:ubiquinone oxidoreductase subunit B9

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019174531 Unplaced Scaffold Reference Sdu_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Whole Genome Sequencing of Greater Amberjack (Seriola dumerili) for SNP Identification on Aligned Scaffolds and Genome Structural Variation Analysis Using Parallel Resequencing. Araki K, et al. Int J Genomics, 2018. PMID 29785397, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ERAD pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endomembrane system IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase RNF139

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Seriola dumerili Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sdu_1.0 Primary Assembly

Genomic

  1. NW_019174531.1 Reference Sdu_1.0 Primary Assembly

    Range
    1509643..1517345 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022757468.1 → XP_022613189.1  E3 ubiquitin-protein ligase RNF139

    UniProtKB/TrEMBL
    A0A3B4UKB8, A0A3B4UL94
    Related
    ENSSDUP00000019111.1, ENSSDUT00000019455.1
    Conserved Domains (2) summary
    pfam13705
    Location:13 → 525
    TRC8_N; TRC8 N-terminal domain
    cd16683
    Location:554 → 595
    RING-H2_RNF139; RING finger, H2 subclass, found in RING finger protein 139 (RNF139) and similar proteins
Nucleotide Protein
Heading Accession and Version

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