U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

rabgap1l RAB GTPase activating protein 1-like [ Seriola dumerili (greater amberjack) ]

Gene ID: 111228445, updated on 15-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
rabgap1l
Gene description
RAB GTPase activating protein 1-like
See related
Ensembl:ENSSDUG00000009910
Gene type
protein coding
RefSeq status
MODEL
Organism
Seriola dumerili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangiformes; Carangidae; Seriola
Orthologs
human zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: Un
Exon count:
28
Annotation release Status Assembly Chr Location
100 current Sdu_1.0 (GCF_002260705.1) Unplaced Scaffold NW_019174257.1 (7098925..7214331, complement)

NW_019174257.1Genomic Context describing neighboring genes Neighboring gene interferon-induced protein 44-like Neighboring gene interferon-induced protein 44-like Neighboring gene G protein-coupled receptor 52 Neighboring gene family with sequence similarity 163 member Ab Neighboring gene tudor domain containing 5

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_019174257 Unplaced Scaffold Reference Sdu_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Whole Genome Sequencing of Greater Amberjack (Seriola dumerili) for SNP Identification on Aligned Scaffolds and Genome Structural Variation Analysis Using Parallel Resequencing. Araki K, et al. Int J Genomics, 2018. PMID 29785397, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

General protein information

Go to the top of the page Help
Preferred Names
rab GTPase-activating protein 1-like

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Seriola dumerili Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sdu_1.0 Primary Assembly

Genomic

  1. NW_019174257.1 Reference Sdu_1.0 Primary Assembly

    Range
    7098925..7214331 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022754363.1 → XP_022610084.1  rab GTPase-activating protein 1-like isoform X1

    UniProtKB/TrEMBL
    A0A3B4U5A5, A0A3B4U692
    Related
    ENSSDUP00000013708.1, ENSSDUT00000013959.1
    Conserved Domains (4) summary
    cd01211
    Location:113 → 241
    PTB_Rab6GAP; GTPase activating protein for Rab 6 Phosphotyrosine-binding (PTB) domain
    pfam00566
    Location:523 → 724
    RabGAP-TBC; Rab-GTPase-TBC domain
    pfam12473
    Location:274 → 405
    DUF3694; Kinesin protein
    cl25732
    Location:740 → 999
    SMC_N; RecF/RecN/SMC N terminal domain

  2. XM_022754450.1 → XP_022610171.1  rab GTPase-activating protein 1-like isoform X1

    UniProtKB/TrEMBL
    A0A3B4U5A5, A0A3B4U692
    Related
    ENSSDUP00000013779.1, ENSSDUT00000014036.1
    Conserved Domains (4) summary
    cd01211
    Location:113 → 241
    PTB_Rab6GAP; GTPase activating protein for Rab 6 Phosphotyrosine-binding (PTB) domain
    pfam00566
    Location:523 → 724
    RabGAP-TBC; Rab-GTPase-TBC domain
    pfam12473
    Location:274 → 405
    DUF3694; Kinesin protein
    cl25732
    Location:740 → 999
    SMC_N; RecF/RecN/SMC N terminal domain

  3. XM_022754537.1 → XP_022610258.1  rab GTPase-activating protein 1-like isoform X2

    UniProtKB/TrEMBL
    A0A3B4U5W2
    Related
    ENSSDUP00000013752.1, ENSSDUT00000014003.1
    Conserved Domains (1) summary
    cl25732
    Location:44 → 280
    SMC_N; RecF/RecN/SMC N terminal domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.