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sntb1 syntrophin, basic 1 [ Seriola dumerili (greater amberjack) ]

Gene ID: 111227796, updated on 15-Mar-2024

Summary

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Gene symbol
sntb1
Gene description
syntrophin, basic 1
See related
Ensembl:ENSSDUG00000015780
Gene type
protein coding
RefSeq status
MODEL
Organism
Seriola dumerili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangiformes; Carangidae; Seriola
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
100 current Sdu_1.0 (GCF_002260705.1) Unplaced Scaffold NW_019174446.1 (9467469..9504433)

NW_019174446.1Genomic Context describing neighboring genes Neighboring gene E3 ubiquitin-protein ligase TRIM39-like Neighboring gene cellular communication network factor 3 Neighboring gene MDM2 binding protein Neighboring gene zinc finger and AT-hook domain containing

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019174446 Unplaced Scaffold Reference Sdu_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Whole Genome Sequencing of Greater Amberjack (Seriola dumerili) for SNP Identification on Aligned Scaffolds and Genome Structural Variation Analysis Using Parallel Resequencing. Araki K, et al. Int J Genomics, 2018. PMID 29785397, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural molecule activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of dystrophin-associated glycoprotein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in intracellular anatomical structure IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synapse IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-1-syntrophin
Names
syntrophin beta 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Seriola dumerili Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sdu_1.0 Primary Assembly

Genomic

  1. NW_019174446.1 Reference Sdu_1.0 Primary Assembly

    Range
    9467469..9504433
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022753509.1 → XP_022609230.1  beta-1-syntrophin

    UniProtKB/TrEMBL
    A0A3B4UTQ6, A0A3B4UV40
    Related
    ENSSDUP00000021717.1, ENSSDUT00000022115.1
    Conserved Domains (4) summary
    cd00992
    Location:103 → 184
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    cd01258
    Location:235 → 300
    PHsplit_syntrophin; Syntrophin Split Pleckstrin homology (PH) domain
    pfam00169
    Location:324 → 433
    PH; PH domain
    cl17171
    Location:16 → 48
    PH-like; Pleckstrin homology-like domain
Nucleotide Protein
Heading Accession and Version

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